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4KNK
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BU of 4knk by Molmil
Crystal structure of Staphylococcus aureus hydrolase AmiA
Descriptor: 1,2-ETHANEDIOL, Bifunctional autolysin, DI(HYDROXYETHYL)ETHER, ...
Authors:Buettner, F.M, Zoll, S, Stehle, T.
Deposit date:2013-05-10
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.124 Å)
Cite:Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage.
J.Biol.Chem., 289, 2014
6SU5
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BU of 6su5 by Molmil
Ph2119 endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119
Descriptor: GLYCEROL, Lysozyme, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
Deposit date:2019-09-13
Release date:2020-09-30
Last modified:2021-04-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
6SRT
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BU of 6srt by Molmil
Endolysine N-acetylmuramoyl-L-alanine amidase LysCS from Clostridium intestinale URNW
Descriptor: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.-K, Kaczorowski, T.
Deposit date:2019-09-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Structure and function of endolysines LysCS, LysC from Clostridium intestinale
To Be Published
6SSC
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BU of 6ssc by Molmil
N-acetylmuramoyl-L-alanine amidase LysC from Clostridium intestinale URNW
Descriptor: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Kovacic, R, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
Deposit date:2019-09-06
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
7NSZ
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BU of 7nsz by Molmil
Drosophila PGRP-LB Y78F mutant
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Isoform A of Peptidoglycan-recognition protein LB, SODIUM ION, ...
Authors:Orlans, J, Aller, P, Da Silva, P.
Deposit date:2021-03-08
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction.
Int J Mol Sci, 22, 2021
7NSY
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BU of 7nsy by Molmil
Drosophila PGRP-LB C160S mutant
Descriptor: Isoform A of Peptidoglycan-recognition protein LB
Authors:Orlans, J, Aller, P, Da Silva, P.
Deposit date:2021-03-08
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction.
Int J Mol Sci, 22, 2021
5XZ4
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BU of 5xz4 by Molmil
The X-tay structure of Bumblebee PGRP-SA
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bumblebee peptidoglycan recognition protein SA, SULFATE ION
Authors:Liu, Y.J, Huang, J.X, Zhao, X.M, An, J.D.
Deposit date:2017-07-11
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural Insights into the Preferential Binding of PGRP-SAs from Bumblebees and Honeybees to Dap-Type Peptidoglycans Rather than Lys-Type Peptidoglycans.
J Immunol., 202, 2019
2RKQ
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BU of 2rkq by Molmil
Crystal structure of drosophila peptidoglycan recognition protein SD (PGRP-SD)
Descriptor: Peptidoglycan-recognition protein-SD
Authors:Roussel, A, Royet, J, Leone, P, Kellenberger, C.
Deposit date:2007-10-17
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Drosophila PGRP-SD suggests binding to DAP-type but not lysine-type peptidoglycan
Mol.Immunol., 45, 2008
4KNL
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BU of 4knl by Molmil
Crystal structure of Staphylococcus aureus hydrolase AmiA in complex with its ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Bifunctional autolysin, D(-)-TARTARIC ACID, ...
Authors:Buettner, F.M, Stehle, T.
Deposit date:2013-05-10
Release date:2014-03-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage.
J.Biol.Chem., 289, 2014
1SXR
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BU of 1sxr by Molmil
Drosophila Peptidoglycan Recognition Protein (PGRP)-SA
Descriptor: 1,2-ETHANEDIOL, Peptidoglycan recognition protein SA CG11709-PA, SULFATE ION
Authors:Reiser, J.B, Teyton, L, Wilson, I.A.
Deposit date:2004-03-31
Release date:2004-06-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structure of the Drosophila peptidoglycan recognition protein (PGRP)-SA at 1.56 A resolution
J.Mol.Biol., 340, 2004
1SK4
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BU of 1sk4 by Molmil
crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ialpha
Descriptor: Peptidoglycan recognition protein I-alpha, SODIUM ION
Authors:Guan, R, Malchiodi, E.L, Qian, W, Schuck, P, Mariuzza, R.A.
Deposit date:2004-03-04
Release date:2004-07-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ialpha
J.Biol.Chem., 279, 2004
7F5I
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BU of 7f5i by Molmil
X-ray structure of Clostridium perfringens-specific amidase endolysin
Descriptor: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
Authors:Kamitori, S, Tamai, E.
Deposit date:2021-06-22
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
3LAT
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BU of 3lat by Molmil
Crystal structure of Staphylococcus peptidoglycan hydrolase AmiE
Descriptor: 1,4-BUTANEDIOL, Bifunctional autolysin, CHLORIDE ION, ...
Authors:Zoll, S, Stehle, T.
Deposit date:2010-01-07
Release date:2010-03-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of cell wall cleavage by a staphylococcal autolysin
Plos Pathog., 6, 2010
1YCK
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BU of 1yck by Molmil
Crystal structure of human peptidoglycan recognition protein (PGRP-S)
Descriptor: Peptidoglycan recognition protein
Authors:Guan, R, Wang, Q, Sundberg, E.J, Mariuzza, R.A.
Deposit date:2004-12-22
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of human peptidoglycan recognition protein S (PGRP-S) at 1.70 A resolution.
J.Mol.Biol., 347, 2005
4BOL
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BU of 4bol by Molmil
Crystal structure of AmpDh2 from Pseudomonas aeruginosa in complex with pentapeptide
Descriptor: AMPDH2, D-alanyl-N-[(2S,6R)-6-amino-6-carboxy-1-{[(1R)-1-carboxyethyl]amino}-1-oxohexan-2-yl]-D-glutamine, ZINC ION
Authors:Artola-Recolons, C, Martinez-Caballero, S, Lee, M, Carrasco-Lopez, C, Hesek, D, Spink, E.E, Lastochkin, E, Zhang, W, Hellman, L.M, Boggess, B, Mobashery, S, Hermoso, J.A.
Deposit date:2013-05-21
Release date:2013-07-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
3RT4
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BU of 3rt4 by Molmil
Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein
Descriptor: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
Authors:Sharma, P, Dube, D, Singh, A, Mishra, B, Singh, N, Sinha, M, Dey, S, Kaur, P, Mitra, D.K, Sharma, S, Singh, T.P.
Deposit date:2011-05-03
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein.
J.Biol.Chem., 286, 2011
2XZ4
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BU of 2xz4 by Molmil
Crystal structure of the LFZ ectodomain of the peptidoglycan recognition protein LF
Descriptor: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, COPPER (II) ION, ...
Authors:Basbous, N, Coste, F, Leone, P, Vincentelli, R, Royet, J, Kellenberger, C, Roussel, A.
Deposit date:2010-11-23
Release date:2011-04-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:The Drosophila Peptidoglycan-Recognition Protein Lf Interacts with Peptidoglycan-Recognition Protein Lc to Downregulate the Imd Pathway.
Embo Rep., 12, 2011
4BJ4
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BU of 4bj4 by Molmil
Structure of Pseudomonas aeruginosa amidase Ampdh2
Descriptor: AMPDH2, CITRATE ANION
Authors:Martinez-Caballero, C.S, Carrasco-Lopez, C, Artola-Recolons, C, Hermoso, J.A.
Deposit date:2013-04-16
Release date:2013-07-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.722 Å)
Cite:Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
3NG4
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BU of 3ng4 by Molmil
Ternary complex of peptidoglycan recognition protein (PGRP-S) with Maltose and N-Acetylglucosamine at 1.7 A Resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Peptidoglycan recognition protein 1, ...
Authors:Sharma, P, Dube, D, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-06-10
Release date:2010-07-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Multiligand specificity of pathogen-associated molecular pattern-binding site in peptidoglycan recognition protein
J.Biol.Chem., 286, 2011
3D2Y
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BU of 3d2y by Molmil
Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys
Descriptor: Anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys, GLYCEROL, N-acetylmuramoyl-L-alanine amidase amiD
Authors:Kerff, F, Petrella, S, Herman, R, Sauvage, E, Mercier, F, Luxen, A, Frere, J.M, Joris, B, Charlier, P.
Deposit date:2008-05-09
Release date:2009-06-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
7NT0
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BU of 7nt0 by Molmil
Drosophila PGRP-LB Y78F mutant in complex with tracheal cytotoxin (TCT)
Descriptor: GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA, Isoform A of Peptidoglycan-recognition protein LB, ZINC ION
Authors:Orlans, J, Aller, P, Da Silva, P.
Deposit date:2021-03-08
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction.
Int J Mol Sci, 22, 2021
2Y28
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BU of 2y28 by Molmil
crystal structure of Se-Met AmpD derivative
Descriptor: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, ZINC ION
Authors:Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
Deposit date:2010-12-14
Release date:2011-07-20
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2WKX
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BU of 2wkx by Molmil
Crystal structure of the native E. coli zinc amidase AmiD
Descriptor: CHLORIDE ION, GLYCEROL, N-ACETYLMURAMOYL-L-ALANINE AMIDASE AMID, ...
Authors:Petrella, S, Kerff, F, Herman, R, Genereux, C, Pennartz, A, Sauvage, E, Joris, B, Charlier, P.
Deposit date:2009-06-18
Release date:2010-01-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
2Y2C
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crystal structure of AmpD Apoenzyme
Descriptor: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD
Authors:Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
Deposit date:2010-12-14
Release date:2011-07-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
5DWF
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BU of 5dwf by Molmil
Crystal structure of the complex of Peptidoglycan recognition protein, PGRP-S from camel with ethylene glycol at 1.83 A resolution
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Singh, P.K, Yadav, S.P, Sharma, P, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2015-09-22
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of the complex of Peptidoglycan recognition protein, PGRP-S from camel with ethylene glycol at 1.83 A resolution
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