PDB: 199 resultsInfo pagesStatus searchChemie searchBIRD

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9B8U	Crystal structure of CRX-Ret4 oligonucleotide complex Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CACODYLATE ION, Cone-rod homeobox protein, ... Authors: Srivastava, D, Artemyev, N.O. Deposit date: 2024-04-01 Release date: 2024-07-31 Last modified: 2024-08-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular basis of CRX/DNA recognition and stoichiometry at the Ret4 response element. Structure, 2024
9ANT	ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX Descriptor: ANTENNAPEDIA HOMEODOMAIN, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... Authors: Fraenkel, E, Pabo, C.O. Deposit date: 1998-07-02 Release date: 1998-10-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex. Nat.Struct.Biol., 5, 1998
8T11	Crystal structure of the PEG10 promoter-bound ONECUT2 R479A/R480A mutant DNA-binding domain Descriptor: DNA (5'-D(P*AP*GP*AP*TP*CP*GP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*AP*AP*TP*CP*GP*AP*TP*CP*T)-3'), One cut domain family member 2 Authors: Chatterjee, A, Katiki, M, Murali, R. Deposit date: 2023-06-01 Release date: 2024-08-28 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Crystal structure of the PEG10 promoter-bound ONECUT2 R479A/R480A mutant DNA-binding domain To Be Published
8T0F	Crystal structure of the PEG10 promoter-bound ONECUT2 DNA-binding domain Descriptor: DNA (5'-D(P*AP*GP*AP*TP*CP*GP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*AP*AP*TP*CP*GP*AP*TP*CP*T)-3'), One cut domain family member 2 Authors: Chatterjee, A, Katiki, M, Murali, R. Deposit date: 2023-05-31 Release date: 2024-08-28 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Crystal structure of the PEG10 promoter-bound ONECUT2 DNA-binding domain To Be Published
8SPU	Structure of ESRRB nucleosome bound OCT4 at site c Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2023-05-03 Release date: 2023-06-28 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
8SPS	High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2023-05-03 Release date: 2023-06-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
8PNC	Transcription factor BARHL2 bound to TAAGT DNA sequence Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-30 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Transcription factor BARHL2 bound to different DNA sequences To Be Published
8PNA	transcription factor BARHL2 bound to TAATG DNA sequence Descriptor: ACETATE ION, BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-30 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.45 Å) Cite: transcription factor BARHL2 bound to different DNA sequences To Be Published
8PN4	transcription factor BARHL2 bound to DNA sequences Descriptor: ACETATE ION, BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Yin, Y, Popov, A, Taipale, J. Deposit date: 2023-06-29 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PMV	transcription factor BARHL2 bound to TAAGC DNA sequence Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-29 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PMN	transcription factor BARHL2 bound to DNA sequences Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-29 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.3 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PMF	transcription factor BARHL2 bound to DNA sequences Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-28 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (0.95 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PMC	transcription factor BARHL2 bound to TAATT DNA sequence Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-28 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.85 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PM7	transcription factor BARHL2 bound to TAATC DNA sequence Descriptor: BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-28 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.7 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8PM5	transcription factor BARHL2 bound to TAAAT DNA sequence Descriptor: BarH-like 2 homeobox protein, DNA (5'-D(*AP*AP*CP*CP*AP*TP*TP*TP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*AP*AP*AP*TP*GP*GP*TP*T)-3') Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-28 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2.4 Å) Cite: transcription factor BARHL2 bound to DNA sequences To Be Published
8P7G	Structural characterization of PHOX2B and its DNA interactions shed lights into the molecular basis of the + 7Ala variant pathogenicity in CCHS Descriptor: Paired mesoderm homeobox protein 2B Authors: Russo, L, Diana, D, Fattorusso, R. Deposit date: 2023-05-30 Release date: 2024-05-15 Last modified: 2024-06-26 Method: SOLUTION NMR Cite: Structural characterization of PHOX2B and its DNA interaction shed light on the molecular basis of the +7Ala variant pathogenicity in CCHS. Chem Sci, 15, 2024
8OTS	OCT4 and MYC-MAX co-bound to a nucleosome Descriptor: DNA (127-MER), Green fluorescent protein,POU domain, class 5, ... Authors: Michael, A.K, Stoos, L, Kempf, G, Cavadini, S, Thoma, N. Deposit date: 2023-04-21 Release date: 2023-05-24 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cooperation between bHLH transcription factors and histones for DNA access. Nature, 619, 2023
8OSB	TWIST1-TCF4-ALX4 complex on specific DNA Descriptor: DNA (25-MER), Homeobox protein aristaless-like 4, Transcription factor 4, ... Authors: Morgunova, E, Kim, S, Popov, A, Wysocka, J, Taipale, J. Deposit date: 2023-04-18 Release date: 2024-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: DNA-guided transcription factor cooperativity shapes face and limb mesenchyme. Cell, 187, 2024
8ILW	Transcription factor LMX1a homeobox domain in complex with Pitx3 promoter Descriptor: DNA (5'-D(*CP*AP*AP*CP*AP*CP*TP*TP*AP*AP*TP*CP*CP*AP*AP*A)-3'), DNA (5'-D(*GP*TP*TP*TP*GP*GP*AP*TP*TP*AP*AP*GP*TP*GP*TP*T)-3'), LMX1A factor Authors: Lv, M.Q, Lin, L.Q. Deposit date: 2023-03-04 Release date: 2024-03-06 Method: X-RAY DIFFRACTION (2.712 Å) Cite: Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
8IKE	Transcription factors LMX1a mutant-R199A homeobox domain complex with Wnt1 promoter Descriptor: DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3'), LMX1A factor Authors: Lv, M.Q, Lin, L.Q. Deposit date: 2023-02-28 Release date: 2024-03-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
8IK5	Transcription factor LMX1a homeobox domain in complex with Wnt1 promoter Descriptor: DNA (5'-D(*CP*CP*AP*TP*AP*TP*TP*TP*AP*AP*TP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*AP*TP*TP*AP*AP*AP*TP*AP*TP*G)-3'), GLYCEROL, ... Authors: Lv, M.Q, Lin, L.Q. Deposit date: 2023-02-28 Release date: 2024-03-06 Method: X-RAY DIFFRACTION (1.989 Å) Cite: Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain Febs J., 2024
8G8G	Interaction of H3 tail in LIN28B nucleosome with Oct4 Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8E	Human Oct4 bound to nucleosome with human LIN28B sequence Descriptor: LIN28B DNA (32-MER), POU domain, class 5, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8B	Nucleosome with human nMatn1 sequence in complex with Human Oct4 Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G88	Human Oct4 bound to nucleosome with human nMatn1 sequence Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023

 

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