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5YPK

Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EI2 complex

Resources
File formatFile name (file size)
PDBx/mmCIF5ypk.cif.gz Display(400.75 KB)
5ypk.cif
PDBx/mmJSONall5ypk.json.gz Display (Tree)(249.23 KB)
5ypk.json
no-atom5ypk-noatom.json.gz Display (Header)(31.93 KB)
5ypk-noatom.json
add only5ypk-plus.json.gz Display(1.39 KB)
5ypk-plus.json
PDBMLall5ypk.xml.gz Display(556.07 KB)
5ypk.xml
no-atom5ypk-noatom.xml.gz Display(89.67 KB)
5ypk-noatom.xml
ext-atom5ypk-extatom.xml.gz Display(354.03 KB)
5ypk-extatom.xml
pdb_nextgenallpdb_00005ypk_xyz-enrich.cif.gz Display(453.55 KB)
pdb_00005ypk_xyz-enrich.cif
no-atompdb_00005ypk_xyz-no-atom-enrich.xml.gz Display(149.38 KB)
pdb_00005ypk_xyz-no-atom-enrich.xml
ng-only5ypk-plus.json.gz Display(4.90 KB)
5ypk-plus.json
PDBpdb5ypk.ent.gz Display(323.16 KB)
pdb5ypk.ent
RDF5ypk.rdf.gz Visualize(227.01 KB)
5ypk.rdf
Structure factorsr5ypksf.ent.gz Display(679.55 KB)
r5ypksf.ent
Biological unit (mmCIF format)5ypk-assembly1.cif.gz Display(53.58 KB)
5ypk-assembly1.cif (A)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly2.cif.gz Display(54.30 KB)
5ypk-assembly2.cif (B)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly3.cif.gz Display(55.06 KB)
5ypk-assembly3.cif (C)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly4.cif.gz Display(53.96 KB)
5ypk-assembly4.cif (E)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly5.cif.gz Display(54.46 KB)
5ypk-assembly5.cif (F)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly6.cif.gz Display(53.64 KB)
5ypk-assembly6.cif (G)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly7.cif.gz Display(53.40 KB)
5ypk-assembly7.cif (H)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk-assembly8.cif.gz Display(55.06 KB)
5ypk-assembly8.cif (D)

*software defined assembly, 1 molecule(s) (monomeric)

Biological unit (PDB format)5ypk.pdb1.gz Display(44.65 KB)
5ypk.pdb1 (A)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb2.gz Display(45.09 KB)
5ypk.pdb2 (B)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb3.gz Display(45.53 KB)
5ypk.pdb3 (C)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb4.gz Display(44.88 KB)
5ypk.pdb4 (E)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb5.gz Display(45.42 KB)
5ypk.pdb5 (F)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb6.gz Display(44.79 KB)
5ypk.pdb6 (G)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb7.gz Display(44.71 KB)
5ypk.pdb7 (H)

*author and software defined assembly, 1 molecule(s) (monomeric)

5ypk.pdb8.gz Display(45.73 KB)
5ypk.pdb8 (D)

*software defined assembly, 1 molecule(s) (monomeric)

Validation reportsPDF5ypk_validation.pdf.gz Display(2.13 MB)
5ypk_validation.pdf
PDF-full5ypk_full_validation.pdf.gz Display(2.17 MB)
5ypk_full_validation.pdf
mmCIF5ypk_validation.cif.gz Display(130.33 KB)
5ypk_validation.cif
XML5ypk_validation.xml.gz Display(93.26 KB)
5ypk_validation.xml
PNG5ypk_multipercentile_validation.png.gz Display(169.25 KB)
5ypk_multipercentile_validation.png
SVG5ypk_multipercentile_validation.svg.gz Display(956.00 B)
5ypk_multipercentile_validation.svg
EDMap2fo-fc (PDBx/mmCIF)5ypk_validation_2fo-fc_map_coef.cif.gz Display(1.23 MB)
5ypk_validation_2fo-fc_map_coef.cif
fo-fc (PDBx/mmCIF)5ypk_validation_fo-fc_map_coef.cif.gz Display(1.07 MB)
5ypk_validation_fo-fc_map_coef.cif
2fo-fc (MTZ)5ypk_validation_2fo-fc_map_coef.mtz Visualize(2.87 MB)
fo-fc (MTZ)5ypk_validation_fo-fc_map_coef.mtz Visualize(2.87 MB)

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PDB entries from 2026-01-14

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