Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9TZE

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0005737	cellular_component	cytoplasm
1	0003735	molecular_function	structural constituent of ribosome
1	0006412	biological_process	translation
1	0019843	molecular_function	rRNA binding
1	0022625	cellular_component	cytosolic large ribosomal subunit
2	0005737	cellular_component	cytoplasm
2	0006412	biological_process	translation
2	0008097	molecular_function	5S rRNA binding
2	0019843	molecular_function	rRNA binding
2	0022625	cellular_component	cytosolic large ribosomal subunit
3	0005737	cellular_component	cytoplasm
3	0006412	biological_process	translation
3	0008270	molecular_function	zinc ion binding
3	0019843	molecular_function	rRNA binding
3	0022625	cellular_component	cytosolic large ribosomal subunit
4	0003735	molecular_function	structural constituent of ribosome
4	0006412	biological_process	translation
6	0003735	molecular_function	structural constituent of ribosome
6	0006412	biological_process	translation
6	0019843	molecular_function	rRNA binding
6	0022625	cellular_component	cytosolic large ribosomal subunit
7	0003735	molecular_function	structural constituent of ribosome
7	0006412	biological_process	translation
7	0019843	molecular_function	rRNA binding
7	0022625	cellular_component	cytosolic large ribosomal subunit
8	0003735	molecular_function	structural constituent of ribosome
8	0006412	biological_process	translation
8	0022625	cellular_component	cytosolic large ribosomal subunit
8	0043022	molecular_function	ribosome binding
8	1902626	biological_process	assembly of large subunit precursor of preribosome
9	0005829	cellular_component	cytosol
9	0022611	biological_process	dormancy process
9	0030371	molecular_function	translation repressor activity
9	0045900	biological_process	negative regulation of translational elongation
c	0003735	molecular_function	structural constituent of ribosome
c	0006412	biological_process	translation
c	0022625	cellular_component	cytosolic large ribosomal subunit
C	0003729	molecular_function	mRNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0006412	biological_process	translation
C	0019843	molecular_function	rRNA binding
C	0022627	cellular_component	cytosolic small ribosomal subunit
d	0003735	molecular_function	structural constituent of ribosome
d	0006412	biological_process	translation
d	0019843	molecular_function	rRNA binding
d	0022625	cellular_component	cytosolic large ribosomal subunit
D	0003735	molecular_function	structural constituent of ribosome
D	0006412	biological_process	translation
D	0015935	cellular_component	small ribosomal subunit
D	0019843	molecular_function	rRNA binding
D	0042274	biological_process	ribosomal small subunit biogenesis
e	0000027	biological_process	ribosomal large subunit assembly
e	0003735	molecular_function	structural constituent of ribosome
e	0019843	molecular_function	rRNA binding
e	0022625	cellular_component	cytosolic large ribosomal subunit
E	0005737	cellular_component	cytoplasm
E	0006412	biological_process	translation
E	0019843	molecular_function	rRNA binding
E	0042254	biological_process	ribosome biogenesis
f	0000049	molecular_function	tRNA binding
f	0003723	molecular_function	RNA binding
f	0003735	molecular_function	structural constituent of ribosome
f	0006412	biological_process	translation
f	0019843	molecular_function	rRNA binding
f	0022625	cellular_component	cytosolic large ribosomal subunit
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0022627	cellular_component	cytosolic small ribosomal subunit
F	0070181	molecular_function	small ribosomal subunit rRNA binding
g	0002181	biological_process	cytoplasmic translation
g	0003723	molecular_function	RNA binding
g	0003735	molecular_function	structural constituent of ribosome
g	0006412	biological_process	translation
g	0019843	molecular_function	rRNA binding
g	0022625	cellular_component	cytosolic large ribosomal subunit
G	0000049	molecular_function	tRNA binding
G	0003729	molecular_function	mRNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0019843	molecular_function	rRNA binding
G	0022627	cellular_component	cytosolic small ribosomal subunit
h	0003735	molecular_function	structural constituent of ribosome
h	0005737	cellular_component	cytoplasm
h	0006412	biological_process	translation
h	0019843	molecular_function	rRNA binding
h	0022625	cellular_component	cytosolic large ribosomal subunit
H	0003735	molecular_function	structural constituent of ribosome
H	0005737	cellular_component	cytoplasm
H	0006412	biological_process	translation
H	0019843	molecular_function	rRNA binding
H	0022627	cellular_component	cytosolic small ribosomal subunit
i	0003729	molecular_function	mRNA binding
i	0003735	molecular_function	structural constituent of ribosome
i	0005840	cellular_component	ribosome
i	0006412	biological_process	translation
i	0017148	biological_process	negative regulation of translation
i	0022625	cellular_component	cytosolic large ribosomal subunit
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0005737	cellular_component	cytoplasm
I	0006412	biological_process	translation
I	0015935	cellular_component	small ribosomal subunit
I	0022627	cellular_component	cytosolic small ribosomal subunit
j	0003735	molecular_function	structural constituent of ribosome
j	0006412	biological_process	translation
j	0015934	cellular_component	large ribosomal subunit
j	0019843	molecular_function	rRNA binding
j	0022625	cellular_component	cytosolic large ribosomal subunit
J	0000049	molecular_function	tRNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005737	cellular_component	cytoplasm
J	0006412	biological_process	translation
J	0015935	cellular_component	small ribosomal subunit
k	0003735	molecular_function	structural constituent of ribosome
k	0006412	biological_process	translation
k	0019843	molecular_function	rRNA binding
k	0022625	cellular_component	cytosolic large ribosomal subunit
K	0003735	molecular_function	structural constituent of ribosome
K	0006412	biological_process	translation
K	0019843	molecular_function	rRNA binding
K	0022627	cellular_component	cytosolic small ribosomal subunit
L	0000049	molecular_function	tRNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0019843	molecular_function	rRNA binding
m	0003735	molecular_function	structural constituent of ribosome
m	0006412	biological_process	translation
m	0015934	cellular_component	large ribosomal subunit
m	0022625	cellular_component	cytosolic large ribosomal subunit
M	0000049	molecular_function	tRNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005829	cellular_component	cytosol
M	0006412	biological_process	translation
M	0015935	cellular_component	small ribosomal subunit
M	0019843	molecular_function	rRNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0006412	biological_process	translation
N	0019843	molecular_function	rRNA binding
N	0022627	cellular_component	cytosolic small ribosomal subunit
o	0002181	biological_process	cytoplasmic translation
o	0003723	molecular_function	RNA binding
o	0003735	molecular_function	structural constituent of ribosome
o	0006412	biological_process	translation
o	0015934	cellular_component	large ribosomal subunit
o	0019843	molecular_function	rRNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0006412	biological_process	translation
O	0019843	molecular_function	rRNA binding
O	0022627	cellular_component	cytosolic small ribosomal subunit
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0006412	biological_process	translation
P	0015935	cellular_component	small ribosomal subunit
q	0006412	biological_process	translation
q	0019843	molecular_function	rRNA binding
Q	0003735	molecular_function	structural constituent of ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0022627	cellular_component	cytosolic small ribosomal subunit
r	0006412	biological_process	translation
r	0022625	cellular_component	cytosolic large ribosomal subunit
R	0003735	molecular_function	structural constituent of ribosome
R	0006412	biological_process	translation
R	0019843	molecular_function	rRNA binding
R	0022627	cellular_component	cytosolic small ribosomal subunit
R	0070181	molecular_function	small ribosomal subunit rRNA binding
s	0003735	molecular_function	structural constituent of ribosome
s	0006412	biological_process	translation
s	0019843	molecular_function	rRNA binding
s	0022625	cellular_component	cytosolic large ribosomal subunit
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0006412	biological_process	translation
S	0019843	molecular_function	rRNA binding
S	0022627	cellular_component	cytosolic small ribosomal subunit
t	0006412	biological_process	translation
t	0022625	cellular_component	cytosolic large ribosomal subunit
T	0005829	cellular_component	cytosol
T	0006412	biological_process	translation
T	0015935	cellular_component	small ribosomal subunit
T	0019843	molecular_function	rRNA binding
T	0070181	molecular_function	small ribosomal subunit rRNA binding
u	0003723	molecular_function	RNA binding
u	0006412	biological_process	translation
u	0008097	molecular_function	5S rRNA binding
u	0022625	cellular_component	cytosolic large ribosomal subunit
U	0006412	biological_process	translation
v	0006412	biological_process	translation
w	0003735	molecular_function	structural constituent of ribosome
w	0006412	biological_process	translation
w	0019843	molecular_function	rRNA binding
x	0003735	molecular_function	structural constituent of ribosome
x	0006412	biological_process	translation
x	0019843	molecular_function	rRNA binding
x	0022625	cellular_component	cytosolic large ribosomal subunit
x	0070180	molecular_function	large ribosomal subunit rRNA binding
y	0006412	biological_process	translation
z	0003735	molecular_function	structural constituent of ribosome
z	0006412	biological_process	translation
z	0015934	cellular_component	large ribosomal subunit
z	0022625	cellular_component	cytosolic large ribosomal subunit

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtrkgvrrn.DGslirFdnNavVL

Chain	Residue	Details
x	ALA60-LEU86

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFInavmrnGKKsvaekIVygA

Chain	Residue	Details
G	SER20-ALA46

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIISTSkGVMsdrqAR

Chain	Residue	Details
H	GLY100-ARG117

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrGLrsA.GLeVihleDrTPlPHN

Chain	Residue	Details
K	ILE91-ASN113

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
L	LYS43-ARG50

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtIrEcRPIS

Chain	Residue	Details
Q	GLY59-SER71

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvyIsenmVGhkLGEFaiT

Chain	Residue	Details
S	ASN53-THR77

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. MikISGQkpLiTyARkS

Chain	Residue	Details
f	MET57-SER73

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGdsGQagAirhGiTRAL

Chain	Residue	Details
I	GLY72-LEU90

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrtGAiirGPIlLPT

Chain	Residue	Details
J	ALA30-THR45

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LtdHMkahKhDhhSrrgLlrMvsqrrkLlnF

Chain	Residue	Details
O	LEU39-PHE69

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrfHaRArGRanqilkrtCHITVkV

Chain	Residue	Details
j	ARG83-VAL107

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGVAmNPvD

Chain	Residue	Details
o	PRO218-ASP229

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FkegqvvDvrGlTrGKGfaGtvkR

Chain	Residue	Details
d	PHE104-ARG127

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI

Chain	Residue	Details
g	PRO155-ILE163

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrlcgrpcgtfkkFGLCRiHLR

Chain	Residue	Details
N	ARG61-ARG83

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..FradIDyatasakTtyGiiG

Chain	Residue	Details
C	ALA163-GLY197

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRvfgFsAlvVAGDgd.GkVGfGlgkar.EVps.AI

Chain	Residue	Details
E	GLY30-ILE62

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRmgfAaTraeARqLI

Chain	Residue	Details
D	LEU94-ILE118

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. EGiRHrrGlpLRGQ

Chain	Residue	Details
M	GLU88-GLN101

site_id	PS00651
Number of Residues	28
Details	RIBOSOMAL_L9 Ribosomal protein L9 signature. GniGdqvvVkpGYarNFLlplgkAvpaT

Chain	Residue	Details
q	GLY13-THR40

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. IKGMLPkgpl.GRqlyrkLkIYaG

Chain	Residue	Details
i	ILE105-GLY127

site_id	PS00784
Number of Residues	20
Details	RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTYQpskqkRnrth.GFraR

Chain	Residue	Details
y	LYS2-ARG21

site_id	PS00828
Number of Residues	26
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkvIrRngvVrViCsda.RHkQrQ

Chain	Residue	Details
3	CYS11-GLN36

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGthyrpG

Chain	Residue	Details
8	GLY34-GLY48

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTNrGAvKRFkvtgsgkikraasnh.NH

Chain	Residue	Details
z	LYS5-HIS31

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRaLWIVRINaaaR

Chain	Residue	Details
e	LYS54-ARG70

site_id	PS01015
Number of Residues	16
Details	RIBOSOMAL_L19 Ribosomal protein L19 signature. VnRrGDVR.RAKLYYLR

Chain	Residue	Details
c	VAL87-ARG102

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. DDtViVItGrdKGrq.GkV

Chain	Residue	Details
1	ASP9-VAL26

site_id	PS01143
Number of Residues	22
Details	RIBOSOMAL_L31 Ribosomal protein L31 signature. EIcsacHPFYTgqqkmvdta....GR

Chain	Residue	Details
4	GLU35-ARG56

site_id	PS01167
Number of Residues	23
Details	RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK

Chain	Residue	Details
m	ILE34-LYS56

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. IeiiKfkrRKhhmkrqGHRQdfT

Chain	Residue	Details
h	ILE72-THR94

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	68
Details	Domain: {"description":"KH type-2"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	62
Details	Domain: {"description":"S4 RNA-binding","evidences":[{"source":"HAMAP-Rule","id":"MF_01306","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	63
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	236
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	19
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00251","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	1
Details	Modified residue: {"description":"N5-methylglutamine","evidences":[{"source":"HAMAP-Rule","id":"MF_01325","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	9
Details	Compositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)