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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9SMD

Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)

This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrtkkgqqrk.DGthlkFddNacVL
ChainResidueDetails
jALA60-LEU86
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. NtLvtrIInvimedGKKglaqrILygA
ChainResidueDetails
FASN19-ALA45
site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIISTSdGVMtdkvAR
ChainResidueDetails
GGLY112-ARG129
site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrSFanA.GLsIteinEkTPiPHN
ChainResidueDetails
JILE90-ASN112
site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
KLYS56-ARG63
site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDkVqIvEtRPLS
ChainResidueDetails
PGLY58-SER70
site_idPS00057
Number of Residues25
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. IDLiddLeaLkrFLSPy.AKInprRI
ChainResidueDetails
QILE51-ILE75
site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfinvyVtddmVGhkLGEFspT
ChainResidueDetails
RASN53-THR77
site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LhlISGQkpVaTkAKnA
ChainResidueDetails
dLEU57-ALA73
site_idPS00359
Number of Residues16
DetailsRIBOSOMAL_L11 Ribosomal protein L11 signature. KmVlGTakQMGiEViE
ChainResidueDetails
hLYS122-GLU137
site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGftGQagAirlGiVRAL
ChainResidueDetails
HGLY71-LEU89
site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. VkgvDVkikGPLpLPT
ChainResidueDetails
IVAL35-THR50
site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LtdHLlanKkDfiSkrgLyaKvskrkrLlkY
ChainResidueDetails
NLEU36-TYR66
site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. KrtIpRAkGSsnmitkrsSNLVVkL
ChainResidueDetails
rLYS83-LEU107
site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGSAmNPnD
ChainResidueDetails
aPRO226-ASP237
site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FqvgeyvDvsAiSkGRGftGaikR
ChainResidueDetails
bPHE102-ARG125
site_idPS00525
Number of Residues9
DetailsRIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV
ChainResidueDetails
ePRO157-VAL165
site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CqrcgraravlshFGVCRlCFR
ChainResidueDetails
MARG23-ARG45
site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARdkmyieGnMplSt..LradIDyalekaqTtyGviG
ChainResidueDetails
WALA166-GLY200
site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. KPHLINqTRRLLATI
ChainResidueDetails
wLYS40-ILE54
site_idPS00582
Number of Residues20
DetailsRIBOSOMAL_L33 Ribosomal protein L33 signature. YlTfKNvkknPekLAlnKFC
ChainResidueDetails
zTYR19-CYS38
site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRnmrFsVlvVVGNrk.GkIGyGiakal.EVpn.AI
ChainResidueDetails
AAGLY83-ILE115
site_idPS00586
Number of Residues12
DetailsRIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. GKtGKMWIRIFP
ChainResidueDetails
lGLY59-PRO70
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdniVYRmgfApTrrsARqLV
ChainResidueDetails
CLEU93-VAL117
site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrkNlpVRGQ
ChainResidueDetails
LARG87-GLN100
site_idPS00651
Number of Residues28
DetailsRIBOSOMAL_L9 Ribosomal protein L9 signature. GkrFdvvdVkdGYaiHFLfpkklAaplT
ChainResidueDetails
fGLY13-THR40
site_idPS00701
Number of Residues12
DetailsRIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGnpefW
ChainResidueDetails
lARG82-TRP93
site_idPS00755
Number of Residues20
DetailsSECY_1 Protein secY signature 1. SLFaVGIsPYIsAQIVMQLL
ChainResidueDetails
10SER83-LEU102
site_idPS00756
Number of Residues18
DetailsSECY_2 Protein secY signature 2. FLgDtISkk.GIGNGiTLL
ChainResidueDetails
10PHE183-LEU200
site_idPS00783
Number of Residues23
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPdnrl.SRrwitkVhVFkG
ChainResidueDetails
iVAL108-GLY130
site_idPS00784
Number of Residues20
DetailsRIBOSOMAL_L34 Ribosomal protein L34 signature. KRTYQpsklkRakth.GFlaR
ChainResidueDetails
0LYS2-ARG21
site_idPS00828
Number of Residues26
DetailsRIBOSOMAL_L36 Ribosomal protein L36 signature. CkdCkiIkRhqiVrViCktq.KHkQrQ
ChainResidueDetails
2CYS11-GLN36
site_idPS00831
Number of Residues15
DetailsRIBOSOMAL_L27 Ribosomal protein L27 signature. GqIIyRQRGtrvypG
ChainResidueDetails
uGLY48-GLY62
site_idPS00936
Number of Residues27
DetailsRIBOSOMAL_L35 Ribosomal protein L35 signature. KVKsAAkKRFkltksgqikrkhayt.SH
ChainResidueDetails
1LYS2-HIS28
site_idPS00937
Number of Residues17
DetailsRIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRsLWILRLNaalR
ChainResidueDetails
pLYS53-ARG69
site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PnlLIVdDpvyEknaVaEanilRIP
ChainResidueDetails
APRO173-PRO197
site_idPS01015
Number of Residues16
DetailsRIBOSOMAL_L19 Ribosomal protein L19 signature. LkRrGKVR.RAYISYMR
ChainResidueDetails
oLEU90-ARG105
site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GlKELAYpIK
ChainResidueDetails
EGLY41-LYS50
site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDkVvVItGknKGgs.GiV
ChainResidueDetails
tGLY7-VAL24
site_idPS01109
Number of Residues35
DetailsRIBOSOMAL_L10 Ribosomal protein L10 signature. KaqQvadVShllstsagfVifDytSMSAiEAtsIR
ChainResidueDetails
gLYS7-ARG41
site_idPS01143
Number of Residues22
DetailsRIBOSOMAL_L31 Ribosomal protein L31 signature. DIcgkcHPFYIgeltkqtvh....GR
ChainResidueDetails
xASP37-ARG58
site_idPS01167
Number of Residues23
DetailsRIBOSOMAL_L17 Ribosomal protein L17 signature. IeTTlkKaKntqkrlDkLITlAK
ChainResidueDetails
mILE31-LYS53
site_idPS01169
Number of Residues23
DetailsRIBOSOMAL_L21 Ribosomal protein L21 signature. VnviKhisQKhhlkkyGHRQpyT
ChainResidueDetails
qVAL68-THR90
site_idPS01312
Number of Residues16
DetailsSECA SecA family signature. VtISTNMAGRGtDIrL
ChainResidueDetails
9VAL481-LEU496
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues474
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues82
DetailsCompositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues202
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01465","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues320
DetailsTransmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00251","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01382","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues63
DetailsDomain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues35
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues61
DetailsDomain: {"description":"S4 RNA-binding","evidences":[{"source":"HAMAP-Rule","id":"MF_01306","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00270","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues70
DetailsDomain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues26
DetailsCompositional bias: {"description":"Gly residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues25
DetailsRegion: {"description":"Unknown"}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00294","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues29
DetailsCompositional bias: {"description":"Low complexity","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues68
DetailsCompositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

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PDB entries from 2026-09-23

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