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9S3F

Cryo-EM structure of Gephyrin in complex with Darpin 27F3, revealing linker-E domain interactions

Functional Information from GO Data
ChainGOidnamespacecontents
A0005102molecular_functionsignaling receptor binding
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0005886cellular_componentplasma membrane
A0006605biological_processprotein targeting
A0006777biological_processMo-molybdopterin cofactor biosynthetic process
A0007416biological_processsynapse assembly
A0007529biological_processestablishment of synaptic specificity at neuromuscular junction
A0008940molecular_functionnitrate reductase activity
A0009898cellular_componentcytoplasmic side of plasma membrane
A0010038biological_processresponse to metal ion
A0014069cellular_componentpostsynaptic density
A0015631molecular_functiontubulin binding
A0030425cellular_componentdendrite
A0030674molecular_functionprotein-macromolecule adaptor activity
A0032324biological_processmolybdopterin cofactor biosynthetic process
A0042802molecular_functionidentical protein binding
A0043025cellular_componentneuronal cell body
A0043197cellular_componentdendritic spine
A0043546molecular_functionmolybdopterin cofactor binding
A0045184biological_processestablishment of protein localization
A0045202cellular_componentsynapse
A0045211cellular_componentpostsynaptic membrane
A0050808biological_processsynapse organization
A0060077cellular_componentinhibitory synapse
A0060090molecular_functionmolecular adaptor activity
A0061598molecular_functionmolybdopterin adenylyltransferase activity
A0061599molecular_functionmolybdopterin molybdotransferase activity
A0072579biological_processglycine receptor clustering
A0097060cellular_componentsynaptic membrane
A0097112biological_processgamma-aminobutyric acid receptor clustering
A0098690cellular_componentglycinergic synapse
A0098794cellular_componentpostsynapse
A0098982cellular_componentGABA-ergic synapse
A0099091cellular_componentpostsynaptic specialization, intracellular component
A0099572cellular_componentpostsynaptic specialization
A0099645biological_processneurotransmitter receptor localization to postsynaptic specialization membrane
B0005102molecular_functionsignaling receptor binding
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0005886cellular_componentplasma membrane
B0006605biological_processprotein targeting
B0006777biological_processMo-molybdopterin cofactor biosynthetic process
B0007416biological_processsynapse assembly
B0007529biological_processestablishment of synaptic specificity at neuromuscular junction
B0008940molecular_functionnitrate reductase activity
B0009898cellular_componentcytoplasmic side of plasma membrane
B0010038biological_processresponse to metal ion
B0014069cellular_componentpostsynaptic density
B0015631molecular_functiontubulin binding
B0030425cellular_componentdendrite
B0030674molecular_functionprotein-macromolecule adaptor activity
B0032324biological_processmolybdopterin cofactor biosynthetic process
B0042802molecular_functionidentical protein binding
B0043025cellular_componentneuronal cell body
B0043197cellular_componentdendritic spine
B0043546molecular_functionmolybdopterin cofactor binding
B0045184biological_processestablishment of protein localization
B0045202cellular_componentsynapse
B0045211cellular_componentpostsynaptic membrane
B0050808biological_processsynapse organization
B0060077cellular_componentinhibitory synapse
B0060090molecular_functionmolecular adaptor activity
B0061598molecular_functionmolybdopterin adenylyltransferase activity
B0061599molecular_functionmolybdopterin molybdotransferase activity
B0072579biological_processglycine receptor clustering
B0097060cellular_componentsynaptic membrane
B0097112biological_processgamma-aminobutyric acid receptor clustering
B0098690cellular_componentglycinergic synapse
B0098794cellular_componentpostsynapse
B0098982cellular_componentGABA-ergic synapse
B0099091cellular_componentpostsynaptic specialization, intracellular component
B0099572cellular_componentpostsynaptic specialization
B0099645biological_processneurotransmitter receptor localization to postsynaptic specialization membrane
Functional Information from PROSITE/UniProt
site_idPS01078
Number of Residues14
DetailsMOCF_BIOSYNTHESIS_1 Molybdenum cofactor biosynthesis proteins signature 1. LILTTGGTGfaprD
ChainResidueDetails
ALEU81-ASP94

site_idPS01079
Number of Residues36
DetailsMOCF_BIOSYNTHESIS_2 Molybdenum cofactor biosynthesis proteins signature 2. SmGekDylkqvLdidlhaqihfgrVfmKPGLPttFA
ChainResidueDetails
ASER575-ALA610

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27112598","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ERR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ERT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ERU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ERV","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27112598","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ERS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27112598","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ERR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ERT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ERV","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q9NQX3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

257629

PDB entries from 2026-08-05

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