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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9RVU

in situ S. pombe hibernating ribosome after 7 days of glucose depletion

This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqrkawrrk.DGvylyFedNagVI
ChainResidueDetails
BhALA78-ILE104
site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAFVKLSadadaldV
ChainResidueDetails
BjLYS119-VAL134
site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. RTgntVhyNmkrRHWRR
ChainResidueDetails
BxARG30-ARG46
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmngrnnGKKllatrIVkhA
ChainResidueDetails
AIGLU69-ALA95
site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GviVLTTSrGIMshneAR
ChainResidueDetails
AcGLY100-ARG117
site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarA.GMrIgrieDvTPiPTD
ChainResidueDetails
ARLEU104-ASP126
site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
AdLYS60-ARG67
site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVtVgQcRPLS
ChainResidueDetails
AOGLY117-SER129
site_idPS00301
Number of Residues16
DetailsG_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DTradEQeRGVTIksT
ChainResidueDetails
HEASP58-THR73
site_idPS00302
Number of Residues8
DetailsIF5A_HYPUSINE Eukaryotic initiation factor 5A hypusine signature. TGKHGhAK
ChainResidueDetails
HITHR50-LYS57
site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKlfnqveIrpemIGhyLGEFsiT
ChainResidueDetails
ASASN106-THR130
site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVfSkARyT
ChainResidueDetails
BWLEU37-THR53
site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvSQiyAirqAiSKAI
ChainResidueDetails
ATGLY68-ILE86
site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdSkfrLilIesrihrLarY
ChainResidueDetails
AQVAL98-TYR128
site_idPS00430
Number of Residues85
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mstvkvngaknggermvlpageaaakyypayrenvpkkarkavrptklraslapgtvcillagrfrgkrvvvlsqle......................................DTLVVTGP
ChainResidueDetails
BRMET1-PRO85
site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRvtaylsspSHIEIiV
ChainResidueDetails
BbARG126-VAL150
site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PrtRGVAmNPvD
ChainResidueDetails
BNPRO196-ASP207
site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDviGvTrGKGneGttaR
ChainResidueDetails
BOPHE209-ARG232
site_idPS00475
Number of Residues32
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGrLpdtp.ViIqtryVSrrAeekIkqaG
ChainResidueDetails
BmLYS110-GLY141
site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRVAaPhhWlLdK
ChainResidueDetails
AHHIS8-LYS22
site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. YGggRTtGFAlIYDDveamkkfE
ChainResidueDetails
AeTYR64-GLU86
site_idPS00548
Number of Residues37
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfadGfMihSgqpAvdfIDsatrhvlLrqGvlG
ChainResidueDetails
AGALA149-GLY185
site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGnDkqGfPM
ChainResidueDetails
AJILE52-MET63
site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIKtTRKDIARI
ChainResidueDetails
BtLYS42-ILE56
site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhqsdRfkRVges..WRKprG
ChainResidueDetails
BqPHE14-GLY34
site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvVIGDsd.GhVGlGikcak.EVat.AI
ChainResidueDetails
AFGLY92-ILE124
site_idPS00628
Number of Residues20
DetailsRIBOSOMAL_S19E Ribosomal protein S19e signature. PshhrdgSgsVqRkVVQsLE
ChainResidueDetails
AWPRO89-GLU108
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVFKlglAkSihhARvLI
ChainResidueDetails
AMLEU105-ILE129
site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. IMqlLrLiQinNgVfvkfnkatkeMLqvVepYV
ChainResidueDetails
BSILE110-VAL142
site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHalDlrVRGQ
ChainResidueDetails
AVARG121-GLN134
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LLSGsrDkSIILWNL
ChainResidueDetails
AmLEU31-LEU45
AmALA78-LEU92
AmVAL120-ILE134
AmCYS207-LEU221
site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicnVrnKdiRkFlDGIYVseR
ChainResidueDetails
BUGLN161-ARG182
site_idPS00709
Number of Residues25
DetailsRIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkyvlGyKstLKtlRsGkaKlILI
ChainResidueDetails
BoSER26-ILE50
site_idPS00712
Number of Residues16
DetailsRIBOSOMAL_S17E Ribosomal protein S17e signature. IaSKrLRNkIAGYtTH
ChainResidueDetails
AUILE41-HIS56
site_idPS00733
Number of Residues8
DetailsRIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH
ChainResidueDetails
AgTYR73-HIS80
site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPhktarGQaalehLqAVeG
ChainResidueDetails
BaVAL85-GLY108
site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NqneKryAIsSAVaASGvpslllaRGH
ChainResidueDetails
BPASN116-HIS142
site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. RLtRELEKKFAdRH
ChainResidueDetails
AKARG78-HIS91
site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
AiGLU59-LEU67
site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlIVVtDpraDaqaIkEasfvNIP
ChainResidueDetails
ADPRO121-PRO145
site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. DLGTacGKlfrvgvLaItDaG
ChainResidueDetails
BoASP82-GLY102
site_idPS00996
Number of Residues9
DetailsRIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA
ChainResidueDetails
AbLEU11-ALA19
site_idPS01073
Number of Residues18
DetailsRIBOSOMAL_L24E Ribosomal protein L24e signature. FsGskVyPGaGrlFvRgD
ChainResidueDetails
BiPHE8-ASP25
site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTqSfGmRhnks.HtiCrRCG
ChainResidueDetails
BvGLY4-GLY23
site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkNKarLG
ChainResidueDetails
BTCYS170-GLY187
site_idPS01104
Number of Residues15
DetailsRIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLeELkaaG
ChainResidueDetails
BXARG70-GLY84
site_idPS01105
Number of Residues22
DetailsRIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GTVsRpHGnsGvVrArFthnLP
ChainResidueDetails
BrGLY70-PRO91
site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KrLfqSKtnRPpISIsKI
ChainResidueDetails
BcLYS49-ILE66
site_idPS01107
Number of Residues12
DetailsRIBOSOMAL_L27E Ribosomal protein L27e signature. GKSaWFFtpLRF
ChainResidueDetails
BlGLY125-PHE136
site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDqItVIrGsnKGre.GkI
ChainResidueDetails
BkASP52-ILE69
site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VRVDpsLNkEvWkRG
ChainResidueDetails
BpVAL54-GLY68
site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnKtriiKTPGN
ChainResidueDetails
BsTHR15-ASN28
site_idPS01168
Number of Residues33
DetailsRIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgCfnittvFShAqtvviCgsCAsvLcqPtG
ChainResidueDetails
AhLYS36-GLY68
site_idPS01170
Number of Residues20
DetailsRIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPIRRvnhrYVIATSapK
ChainResidueDetails
BRASN89-LYS108
site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikvngavqk.GmpHkyYhGkTG
ChainResidueDetails
BfGLY37-GLY62
site_idPS01172
Number of Residues12
DetailsRIBOSOMAL_L44E Ribosomal protein L44e signature. KvTKKvvLRleC
ChainResidueDetails
B0LYS63-CYS74
site_idPS01189
Number of Residues19
DetailsRIBOSOMAL_S12E Ribosomal protein S12e signature. ALKevLkrAlvhDGLarGI
ChainResidueDetails
APALA32-ILE50
site_idPS01190
Number of Residues11
DetailsRIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRvMELIR
ChainResidueDetails
BuPRO50-ARG60
site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRIlEvSLaDL
ChainResidueDetails
AELEU61-LEU73
site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RsaTGAkraqy.RkKrKfELG
ChainResidueDetails
ALARG11-GLY30
site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRiRVrRG
ChainResidueDetails
BZASP46-GLY69
site_idPS01199
Number of Residues20
DetailsRIBOSOMAL_L1 Ribosomal protein L1 signature. IkqIprlLGpgLSKAGkFPS
ChainResidueDetails
HLILE116-SER135
site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRhAFGKPnGlvARV
ChainResidueDetails
BVALA108-VAL129
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues55
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18257517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues63
DetailsDomain: {"description":"S5 DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00268","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues71
DetailsDomain: {"description":"KH type-2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00118","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues63
DetailsDomain: {"description":"S4 RNA-binding"}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues10
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18257517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues74
DetailsCompositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues172
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"3910104","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues1
DetailsModified residue: {"description":"3,4-dihydroxyproline","evidences":[{"source":"PubMed","id":"24550462","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues1
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues40
DetailsZinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues31
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues30
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues30
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues32
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues30
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues29
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues30
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues3
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"18257517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; by set13","evidences":[{"source":"PubMed","id":"20444689","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues23
DetailsZinc finger: {"description":"C4-type"}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues83
DetailsRegion: {"description":"C-terminal-extended nuclear localization signal","evidences":[{"source":"UniProtKB","id":"P10664","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues18
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues36
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues236
DetailsDomain: {"description":"tr-type G","evidences":[{"source":"PROSITE-ProRule","id":"PRU01059","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues1
DetailsModified residue: {"description":"Diphthamide","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI27
Number of Residues1
DetailsModified residue: {"description":"Hypusine","evidences":[{"source":"UniProtKB","id":"P23301","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

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PDB entries from 2026-04-01

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