9QT9

Cryo-EM structure of the core of the Arabidopsis thaliana UBR4/DI19/CALM1 complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0008270	molecular_function	zinc ion binding
A	0009506	cellular_component	plasmodesma
A	0009620	biological_process	response to fungus
A	0009640	biological_process	photomorphogenesis
A	0009733	biological_process	response to auxin
A	0009826	biological_process	unidimensional cell growth
A	0009926	biological_process	auxin polar transport
A	0010311	biological_process	lateral root formation
A	0016020	cellular_component	membrane
A	0048281	biological_process	inflorescence morphogenesis
A	0048364	biological_process	root development
A	0061630	molecular_function	ubiquitin protein ligase activity
A	0071596	biological_process	ubiquitin-dependent protein catabolic process via the N-end rule pathway
A	0140455	biological_process	cytoplasm protein quality control
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0008270	molecular_function	zinc ion binding
B	0009506	cellular_component	plasmodesma
B	0009620	biological_process	response to fungus
B	0009640	biological_process	photomorphogenesis
B	0009733	biological_process	response to auxin
B	0009826	biological_process	unidimensional cell growth
B	0009926	biological_process	auxin polar transport
B	0010311	biological_process	lateral root formation
B	0016020	cellular_component	membrane
B	0048281	biological_process	inflorescence morphogenesis
B	0048364	biological_process	root development
B	0061630	molecular_function	ubiquitin protein ligase activity
B	0071596	biological_process	ubiquitin-dependent protein catabolic process via the N-end rule pathway
B	0140455	biological_process	cytoplasm protein quality control
C	0000981	molecular_function	DNA-binding transcription factor activity, RNA polymerase II-specific
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0006357	biological_process	regulation of transcription by RNA polymerase II
C	0009414	biological_process	response to water deprivation
C	0009737	biological_process	response to abscisic acid
C	0043565	molecular_function	sequence-specific DNA binding
C	0045893	biological_process	positive regulation of DNA-templated transcription
D	0000981	molecular_function	DNA-binding transcription factor activity, RNA polymerase II-specific
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0006357	biological_process	regulation of transcription by RNA polymerase II
D	0009414	biological_process	response to water deprivation
D	0009737	biological_process	response to abscisic acid
D	0043565	molecular_function	sequence-specific DNA binding
D	0045893	biological_process	positive regulation of DNA-templated transcription
E	0005509	molecular_function	calcium ion binding
E	0005513	biological_process	detection of calcium ion
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0009536	cellular_component	plastid
E	0009612	biological_process	response to mechanical stimulus
E	0030234	molecular_function	enzyme regulator activity
F	0005509	molecular_function	calcium ion binding
F	0005513	biological_process	detection of calcium ion
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005886	cellular_component	plasma membrane
F	0009536	cellular_component	plastid
F	0009612	biological_process	response to mechanical stimulus
F	0030234	molecular_function	enzyme regulator activity

Functional Information from PROSITE/UniProt

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DKDGDGCITtkEL

Chain	Residue	Details
E	ASP21-LEU33
E	ASP57-PHE69
E	ASP94-LEU106
E	ASP130-PHE142

---

site_id	PS00028
Number of Residues	21
Details	ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cea..CyevLdadrlpppHtrd..H

Chain	Residue	Details
A	CYS2642-HIS2662

---

site_id	PS01357
Number of Residues	28
Details	ZF_ZZ_1 Zinc finger ZZ-type signature. CdgCstvpilrrRWhCtv...CpDFdLCeaC

Chain	Residue	Details
A	CYS2618-CYS2645

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	40
Details	Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	70
Details	Domain: {"description":"EF-hand 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---