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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9O4K

Cryo-EM Structure of the Arabidopsis GA3-GID1A-RGA-SLY1-ASK1 Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000976molecular_functiontranscription cis-regulatory region binding
A0003700molecular_functionDNA-binding transcription factor activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
A0009409biological_processresponse to cold
A0009723biological_processresponse to ethylene
A0009737biological_processresponse to abscisic acid
A0009739biological_processresponse to gibberellin
A0009740biological_processgibberellic acid mediated signaling pathway
A0009863biological_processsalicylic acid mediated signaling pathway
A0009867biological_processjasmonic acid mediated signaling pathway
A0009909biological_processregulation of flower development
A0009938biological_processnegative regulation of gibberellic acid mediated signaling pathway
A0010029biological_processregulation of seed germination
A0010187biological_processnegative regulation of seed germination
A0010218biological_processresponse to far red light
A0010628biological_processpositive regulation of gene expression
A0033206biological_processmeiotic cytokinesis
A0042176biological_processregulation of protein catabolic process
A0042538biological_processhyperosmotic salinity response
A0043565molecular_functionsequence-specific DNA binding
A0045893biological_processpositive regulation of DNA-templated transcription
A0080154biological_processregulation of fertilization
A1900033biological_processnegative regulation of trichome patterning
A1905613biological_processregulation of developmental vegetative growth
A1905614biological_processnegative regulation of developmental vegetative growth
A1905622biological_processnegative regulation of leaf development
A1990841molecular_functionpromoter-specific chromatin binding
A2000033biological_processregulation of seed dormancy process
A2000377biological_processregulation of reactive oxygen species metabolic process
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0009739biological_processresponse to gibberellin
B0009939biological_processpositive regulation of gibberellic acid mediated signaling pathway
B0010325biological_processraffinose family oligosaccharide biosynthetic process
B0010331molecular_functiongibberellin binding
B0010476biological_processgibberellin mediated signaling pathway
B0016787molecular_functionhydrolase activity
B0048444biological_processfloral organ morphogenesis
B0048530biological_processfruit morphogenesis
B0071456biological_processcellular response to hypoxia
B1905516biological_processpositive regulation of fertilization
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0009740biological_processgibberellic acid mediated signaling pathway
C0009845biological_processseed germination
C0009939biological_processpositive regulation of gibberellic acid mediated signaling pathway
C0010162biological_processseed dormancy process
C0016567biological_processprotein ubiquitination
C0019005cellular_componentSCF ubiquitin ligase complex
C0031146biological_processSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
D0000151cellular_componentubiquitin ligase complex
D0000226biological_processmicrotubule cytoskeleton organization
D0000278biological_processmitotic cell cycle
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005819cellular_componentspindle
D0005829cellular_componentcytosol
D0006511biological_processubiquitin-dependent protein catabolic process
D0007059biological_processchromosome segregation
D0007140biological_processmale meiotic nuclear division
D0009524cellular_componentphragmoplast
D0009733biological_processresponse to auxin
D0009734biological_processauxin-activated signaling pathway
D0009753biological_processresponse to jasmonic acid
D0009867biological_processjasmonic acid mediated signaling pathway
D0009873biological_processethylene-activated signaling pathway
D0016567biological_processprotein ubiquitination
D0019005cellular_componentSCF ubiquitin ligase complex
D0031146biological_processSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
D0045910biological_processnegative regulation of DNA recombination
D0097602molecular_functioncullin family protein binding
Functional Information from PROSITE/UniProt
site_idPS01173
Number of Residues17
DetailsLIPASE_GDXG_HIS Lipolytic enzymes "G-D-X-G" family, putative histidine active site. ILfFHGGSFahsSanSA
ChainResidueDetails
BILE109-ALA125
site_idPS01174
Number of Residues13
DetailsLIPASE_GDXG_SER Lipolytic enzymes "G-D-X-G" family, putative serine active site. IfLAGDSSGGnIA
ChainResidueDetails
BILE185-ALA197
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues54
DetailsRegion: {"description":"Leucine repeat I (LRI)","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues65
DetailsRegion: {"description":"VHIID","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues32
DetailsRegion: {"description":"Leucine repeat II (LRII)","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues87
DetailsRegion: {"description":"PFYRE","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues76
DetailsRegion: {"description":"SAW","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues4
DetailsMotif: {"description":"DELLA motif"}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues4
DetailsMotif: {"description":"LEXLE motif"}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues4
DetailsMotif: {"description":"VHYNP motif"}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues4
DetailsMotif: {"description":"VHIID","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues4
DetailsMotif: {"description":"LXXLL motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01191","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues2
DetailsMotif: {"description":"Involved in the stabilization of the negatively charged intermediate by the formation of the oxyanion hole","evidences":[{"source":"UniProtKB","id":"Q5NUF3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues2
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"Q0ZPV7","evidenceCode":"ECO:0000250"},{"source":"PROSITE-ProRule","id":"PRU10038","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19037309","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2ZSI","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19037309","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2ZSH","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues58
DetailsRegion: {"description":"Interaction with the F-box domain of F-box proteins","evidences":[{"source":"PubMed","id":"17410169","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2025-10-29

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