9NPY
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| B | 0003723 | molecular_function | RNA binding |
| B | 0003735 | molecular_function | structural constituent of ribosome |
| B | 0006412 | biological_process | translation |
| B | 0015935 | cellular_component | small ribosomal subunit |
| E | 0003723 | molecular_function | RNA binding |
| E | 0003735 | molecular_function | structural constituent of ribosome |
| E | 0006412 | biological_process | translation |
| E | 0015935 | cellular_component | small ribosomal subunit |
| L | 0003735 | molecular_function | structural constituent of ribosome |
| L | 0005840 | cellular_component | ribosome |
| L | 0006412 | biological_process | translation |
| O | 0003723 | molecular_function | RNA binding |
| O | 0003735 | molecular_function | structural constituent of ribosome |
| O | 0005840 | cellular_component | ribosome |
| O | 0006412 | biological_process | translation |
| O | 0015935 | cellular_component | small ribosomal subunit |
| Q | 0003735 | molecular_function | structural constituent of ribosome |
| Q | 0005840 | cellular_component | ribosome |
| Q | 0006412 | biological_process | translation |
| R | 0003735 | molecular_function | structural constituent of ribosome |
| R | 0005840 | cellular_component | ribosome |
| R | 0006412 | biological_process | translation |
| S | 0003676 | molecular_function | nucleic acid binding |
| S | 0003723 | molecular_function | RNA binding |
| S | 0003735 | molecular_function | structural constituent of ribosome |
| S | 0005840 | cellular_component | ribosome |
| S | 0006412 | biological_process | translation |
| T | 0003735 | molecular_function | structural constituent of ribosome |
| T | 0005840 | cellular_component | ribosome |
| T | 0006412 | biological_process | translation |
| U | 0003723 | molecular_function | RNA binding |
| U | 0003735 | molecular_function | structural constituent of ribosome |
| U | 0005840 | cellular_component | ribosome |
| U | 0006412 | biological_process | translation |
| U | 0015935 | cellular_component | small ribosomal subunit |
| b | 0003735 | molecular_function | structural constituent of ribosome |
| b | 0005840 | cellular_component | ribosome |
| b | 0006412 | biological_process | translation |
| c | 0003735 | molecular_function | structural constituent of ribosome |
| c | 0005840 | cellular_component | ribosome |
| c | 0006412 | biological_process | translation |
| d | 0003735 | molecular_function | structural constituent of ribosome |
| d | 0005840 | cellular_component | ribosome |
| d | 0006412 | biological_process | translation |
| d | 0008270 | molecular_function | zinc ion binding |
| g | 0043022 | molecular_function | ribosome binding |
| g | 0045182 | molecular_function | translation regulator activity |
Functional Information from PROSITE/UniProt
| site_id | PS00052 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsMMmhgrnnGKKlmtvrIVkhA |
| Chain | Residue | Details |
| E | GLU70-ALA96 |
| site_id | PS00299 |
| Number of Residues | 26 |
| Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
| Chain | Residue | Details |
| b | LYS27-ASP52 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLGEFsiT |
| Chain | Residue | Details |
| O | ASN98-THR122 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvAQiyAirqSiSKAL |
| Chain | Residue | Details |
| Q | GLY74-LEU92 |
| site_id | PS00361 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkekNLkvkGPVrMPT |
| Chain | Residue | Details |
| U | ALA43-THR58 |
| site_id | PS00527 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. RvCsnrhglirkyg.LNMCRqCFR |
| Chain | Residue | Details |
| d | ARG22-ARG44 |
| site_id | PS00548 |
| Number of Residues | 37 |
| Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfvdGlMihSgdpVnyyVDtavrhvlLrqGvlG |
| Chain | Residue | Details |
| B | ALA147-GLY183 |
| site_id | PS00628 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PshfsrgSksVaRrVLQaLE |
| Chain | Residue | Details |
| T | PRO89-GLU108 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHfwGlrVRGQ |
| Chain | Residue | Details |
| S | ARG121-GLN134 |
| site_id | PS00678 |
| Number of Residues | 15 |
| Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSGswDgTLRLWDL |
| Chain | Residue | Details |
| g | ALA78-LEU92 | |
| g | ILE120-THR134 | |
| g | ILE165-LEU179 | |
| g | CYS207-LEU221 |
| site_id | PS00712 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKkLRNkIAGYvTH |
| Chain | Residue | Details |
| R | ILE41-HIS56 |
| site_id | PS00961 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL |
| Chain | Residue | Details |
| c | GLU60-LEU68 |
| site_id | PS01189 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S12E Ribosomal protein S12e signature. ALQevLktAlihDGLarGI |
| Chain | Residue | Details |
| L | ALA17-ILE35 |
