9JBE
Cryo-EM structure of the human LYCHOS in complex with cholesterol and cholesteryl hemisuccinate in the contracted state
This is a non-PDB format compatible entry.
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=1","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 176 |
Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=2","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 170 |
Details | Topological domain: {"description":"Lumenal","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=3","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Discontinuously helical; Name=4","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=5","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Discontinuously helical; Name=6","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Discontinuously helical; Name=7","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=8","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Discontinuously helical; Name=9","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI12 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=10","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI13 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=11","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI14 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=12","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI15 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=13","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI16 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=14","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI17 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=15","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI18 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=16","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI19 |
Number of Residues | 40 |
Details | Transmembrane: {"description":"Helical; Name=17","evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U54","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U56","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U58","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8U5X","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI20 |
Number of Residues | 78 |
Details | Domain: {"description":"DEP","evidences":[{"source":"PROSITE-ProRule","id":"PRU00066","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI21 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"36007018","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI22 |
Number of Residues | 2 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"36007018","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI23 |
Number of Residues | 8 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"39358511","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8U5C","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI24 |
Number of Residues | 4 |
Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |