9ITF

Cryo-EM structure of full-length phyB(Y276H)-PIF6beta complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000160	biological_process	phosphorelay signal transduction system
A	0003677	molecular_function	DNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006325	biological_process	chromatin organization
A	0009266	biological_process	response to temperature stimulus
A	0009408	biological_process	response to heat
A	0009409	biological_process	response to cold
A	0009416	biological_process	response to light stimulus
A	0009585	biological_process	red, far-red light phototransduction
A	0009630	biological_process	gravitropism
A	0009638	biological_process	phototropism
A	0009640	biological_process	photomorphogenesis
A	0009643	biological_process	photosynthetic acclimation
A	0009649	biological_process	entrainment of circadian clock
A	0009687	biological_process	abscisic acid metabolic process
A	0009867	biological_process	jasmonic acid mediated signaling pathway
A	0009881	molecular_function	photoreceptor activity
A	0009883	molecular_function	red or far-red light photoreceptor activity
A	0010017	biological_process	red or far-red light signaling pathway
A	0010018	biological_process	far-red light signaling pathway
A	0010029	biological_process	regulation of seed germination
A	0010148	biological_process	transpiration
A	0010161	biological_process	red light signaling pathway
A	0010202	biological_process	response to low fluence red light stimulus
A	0010218	biological_process	response to far red light
A	0010244	biological_process	response to low fluence blue light stimulus by blue low-fluence system
A	0010374	biological_process	stomatal complex development
A	0010617	biological_process	circadian regulation of calcium ion oscillation
A	0015979	biological_process	photosynthesis
A	0016604	cellular_component	nuclear body
A	0016607	cellular_component	nuclear speck
A	0017012	biological_process	protein-phytochromobilin linkage
A	0031347	biological_process	regulation of defense response
A	0031516	molecular_function	far-red light photoreceptor activity
A	0031517	molecular_function	red light photoreceptor activity
A	0042742	biological_process	defense response to bacterium
A	0042802	molecular_function	identical protein binding
A	0042803	molecular_function	protein homodimerization activity
A	0043565	molecular_function	sequence-specific DNA binding
A	0045892	biological_process	negative regulation of DNA-templated transcription
A	0071588	biological_process	hydrogen peroxide mediated signaling pathway
A	1990841	molecular_function	promoter-specific chromatin binding
A	2000028	biological_process	regulation of photoperiodism, flowering
C	0000160	biological_process	phosphorelay signal transduction system
C	0003677	molecular_function	DNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005654	cellular_component	nucleoplasm
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006325	biological_process	chromatin organization
C	0009266	biological_process	response to temperature stimulus
C	0009408	biological_process	response to heat
C	0009409	biological_process	response to cold
C	0009416	biological_process	response to light stimulus
C	0009585	biological_process	red, far-red light phototransduction
C	0009630	biological_process	gravitropism
C	0009638	biological_process	phototropism
C	0009640	biological_process	photomorphogenesis
C	0009643	biological_process	photosynthetic acclimation
C	0009649	biological_process	entrainment of circadian clock
C	0009687	biological_process	abscisic acid metabolic process
C	0009867	biological_process	jasmonic acid mediated signaling pathway
C	0009881	molecular_function	photoreceptor activity
C	0009883	molecular_function	red or far-red light photoreceptor activity
C	0010017	biological_process	red or far-red light signaling pathway
C	0010018	biological_process	far-red light signaling pathway
C	0010029	biological_process	regulation of seed germination
C	0010148	biological_process	transpiration
C	0010161	biological_process	red light signaling pathway
C	0010202	biological_process	response to low fluence red light stimulus
C	0010218	biological_process	response to far red light
C	0010244	biological_process	response to low fluence blue light stimulus by blue low-fluence system
C	0010374	biological_process	stomatal complex development
C	0010617	biological_process	circadian regulation of calcium ion oscillation
C	0015979	biological_process	photosynthesis
C	0016604	cellular_component	nuclear body
C	0016607	cellular_component	nuclear speck
C	0017012	biological_process	protein-phytochromobilin linkage
C	0031347	biological_process	regulation of defense response
C	0031516	molecular_function	far-red light photoreceptor activity
C	0031517	molecular_function	red light photoreceptor activity
C	0042742	biological_process	defense response to bacterium
C	0042802	molecular_function	identical protein binding
C	0042803	molecular_function	protein homodimerization activity
C	0043565	molecular_function	sequence-specific DNA binding
C	0045892	biological_process	negative regulation of DNA-templated transcription
C	0071588	biological_process	hydrogen peroxide mediated signaling pathway
C	1990841	molecular_function	promoter-specific chromatin binding
C	2000028	biological_process	regulation of photoperiodism, flowering

Functional Information from PROSITE/UniProt

site_id	PS00245
Number of Residues	10
Details	PHYTOCHROME_1 Phytochrome chromophore attachment site signature. RAPHgCHsqY

Chain	Residue	Details
C	ARG352-TYR361

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"24982198","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4OUR","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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