9HVM
In-cell Structure of Pyrenoid Rubisco
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0009507 | cellular_component | chloroplast |
| A | 0015977 | biological_process | carbon fixation |
| A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| A | 0019253 | biological_process | reductive pentose-phosphate cycle |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0009507 | cellular_component | chloroplast |
| C | 0015977 | biological_process | carbon fixation |
| C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| C | 0019253 | biological_process | reductive pentose-phosphate cycle |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0009507 | cellular_component | chloroplast |
| E | 0015977 | biological_process | carbon fixation |
| E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| E | 0019253 | biological_process | reductive pentose-phosphate cycle |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0009507 | cellular_component | chloroplast |
| G | 0015977 | biological_process | carbon fixation |
| G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| G | 0019253 | biological_process | reductive pentose-phosphate cycle |
| I | 0000287 | molecular_function | magnesium ion binding |
| I | 0009507 | cellular_component | chloroplast |
| I | 0015977 | biological_process | carbon fixation |
| I | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| I | 0019253 | biological_process | reductive pentose-phosphate cycle |
| K | 0000287 | molecular_function | magnesium ion binding |
| K | 0009507 | cellular_component | chloroplast |
| K | 0015977 | biological_process | carbon fixation |
| K | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| K | 0019253 | biological_process | reductive pentose-phosphate cycle |
| M | 0000287 | molecular_function | magnesium ion binding |
| M | 0009507 | cellular_component | chloroplast |
| M | 0015977 | biological_process | carbon fixation |
| M | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| M | 0019253 | biological_process | reductive pentose-phosphate cycle |
| O | 0000287 | molecular_function | magnesium ion binding |
| O | 0009507 | cellular_component | chloroplast |
| O | 0015977 | biological_process | carbon fixation |
| O | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| O | 0019253 | biological_process | reductive pentose-phosphate cycle |
Functional Information from PROSITE/UniProt
| site_id | PS00157 |
| Number of Residues | 9 |
| Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE |
| Chain | Residue | Details |
| A | GLY196-GLU204 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | Active site: {"description":"Proton acceptor"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {"description":"in homodimeric partner"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 40 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | Binding site: {"description":"via carbamate group","evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11866526","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11866526","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 8 |
| Details | Site: {"description":"Transition state stabilizer"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 16 |
| Details | Modified residue: {"description":"4-hydroxyproline","evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11866526","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 8 |
| Details | Modified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11866526","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"6302265","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 16 |
| Details | Modified residue: {"description":"S-methylcysteine","evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11866526","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 8 |
| Details | Modified residue: {"description":"N-methylmethionine","evidences":[{"source":"PubMed","id":"11641402","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
