Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9G0A

Influenza A/H7N9 polymerase post-cleavage cap-snatching complex

Functional Information from GO Data
ChainGOidnamespacecontents
B0000428cellular_componentDNA-directed RNA polymerase complex
B0001172biological_processRNA-templated transcription
B0003899molecular_functionDNA-directed RNA polymerase activity
B0003968molecular_functionRNA-directed RNA polymerase activity
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0008270molecular_functionzinc ion binding
B0016740molecular_functiontransferase activity
B0016779molecular_functionnucleotidyltransferase activity
B0016787molecular_functionhydrolase activity
B0034062molecular_function5'-3' RNA polymerase activity
B0046872molecular_functionmetal ion binding
C0000428cellular_componentDNA-directed RNA polymerase complex
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005665cellular_componentRNA polymerase II, core complex
C0005829cellular_componentcytosol
C0006366biological_processtranscription by RNA polymerase II
D0000428cellular_componentDNA-directed RNA polymerase complex
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005665cellular_componentRNA polymerase II, core complex
D0005829cellular_componentcytosol
D0006366biological_processtranscription by RNA polymerase II
D0006367biological_processtranscription initiation at RNA polymerase II promoter
D0016607cellular_componentnuclear speck
D0031369molecular_functiontranslation initiation factor binding
E0000428cellular_componentDNA-directed RNA polymerase complex
E0003899molecular_functionDNA-directed RNA polymerase activity
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005665cellular_componentRNA polymerase II, core complex
E0005666cellular_componentRNA polymerase III complex
E0005736cellular_componentRNA polymerase I complex
E0006362biological_processtranscription elongation by RNA polymerase I
E0006366biological_processtranscription by RNA polymerase II
E0042797biological_processtRNA transcription by RNA polymerase III
F0000428cellular_componentDNA-directed RNA polymerase complex
F0001650cellular_componentfibrillar center
F0003899molecular_functionDNA-directed RNA polymerase activity
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005665cellular_componentRNA polymerase II, core complex
F0005666cellular_componentRNA polymerase III complex
F0005736cellular_componentRNA polymerase I complex
F0006360biological_processtranscription by RNA polymerase I
F0006366biological_processtranscription by RNA polymerase II
F0042797biological_processtRNA transcription by RNA polymerase III
G0000428cellular_componentDNA-directed RNA polymerase complex
G0005634cellular_componentnucleus
G0006352biological_processDNA-templated transcription initiation
H0000428cellular_componentDNA-directed RNA polymerase complex
H0003899molecular_functionDNA-directed RNA polymerase activity
H0005634cellular_componentnucleus
H0005654cellular_componentnucleoplasm
H0005665cellular_componentRNA polymerase II, core complex
H0005666cellular_componentRNA polymerase III complex
H0005736cellular_componentRNA polymerase I complex
H0006351biological_processDNA-templated transcription
I0000428cellular_componentDNA-directed RNA polymerase complex
I0001193biological_processmaintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
I0003899molecular_functionDNA-directed RNA polymerase activity
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005665cellular_componentRNA polymerase II, core complex
I0005730cellular_componentnucleolus
I0006283biological_processtranscription-coupled nucleotide-excision repair
I0006366biological_processtranscription by RNA polymerase II
I0006367biological_processtranscription initiation at RNA polymerase II promoter
I0008270molecular_functionzinc ion binding
I0046872molecular_functionmetal ion binding
J0000428cellular_componentDNA-directed RNA polymerase complex
J0005634cellular_componentnucleus
J0005665cellular_componentRNA polymerase II, core complex
J0008270molecular_functionzinc ion binding
J0046872molecular_functionmetal ion binding
K0000428cellular_componentDNA-directed RNA polymerase complex
K0003899molecular_functionDNA-directed RNA polymerase activity
K0005634cellular_componentnucleus
K0005665cellular_componentRNA polymerase II, core complex
K0006366biological_processtranscription by RNA polymerase II
L0000428cellular_componentDNA-directed RNA polymerase complex
L0003899molecular_functionDNA-directed RNA polymerase activity
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005665cellular_componentRNA polymerase II, core complex
L0005666cellular_componentRNA polymerase III complex
L0005730cellular_componentnucleolus
L0005736cellular_componentRNA polymerase I complex
L0006366biological_processtranscription by RNA polymerase II
L0008270molecular_functionzinc ion binding
L0046872molecular_functionmetal ion binding
Y0000122biological_processnegative regulation of transcription by RNA polymerase II
Y0000993molecular_functionRNA polymerase II complex binding
Y0005515molecular_functionprotein binding
Y0005634cellular_componentnucleus
Y0005654cellular_componentnucleoplasm
Y0006355biological_processregulation of DNA-templated transcription
Y0006368biological_processtranscription elongation by RNA polymerase II
Y0008270molecular_functionzinc ion binding
Y0032044cellular_componentDSIF complex
Y0032785biological_processnegative regulation of DNA-templated transcription, elongation
Y0032786biological_processpositive regulation of DNA-templated transcription, elongation
Y0034243biological_processregulation of transcription elongation by RNA polymerase II
Y0034244biological_processnegative regulation of transcription elongation by RNA polymerase II
Y0045944biological_processpositive regulation of transcription by RNA polymerase II
Y0046872molecular_functionmetal ion binding
Y0046982molecular_functionprotein heterodimerization activity
Y0140870molecular_functionRNA polymerase inhibitor activity
Z0000122biological_processnegative regulation of transcription by RNA polymerase II
Z0003682molecular_functionchromatin binding
Z0003723molecular_functionRNA binding
Z0003729molecular_functionmRNA binding
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005654cellular_componentnucleoplasm
Z0006368biological_processtranscription elongation by RNA polymerase II
Z0016239biological_processpositive regulation of macroautophagy
Z0019899molecular_functionenzyme binding
Z0032044cellular_componentDSIF complex
Z0032785biological_processnegative regulation of DNA-templated transcription, elongation
Z0032786biological_processpositive regulation of DNA-templated transcription, elongation
Z0032968biological_processpositive regulation of transcription elongation by RNA polymerase II
Z0034243biological_processregulation of transcription elongation by RNA polymerase II
Z0045944biological_processpositive regulation of transcription by RNA polymerase II
Z0046982molecular_functionprotein heterodimerization activity
Z0140870molecular_functionRNA polymerase inhibitor activity
a0003723molecular_functionRNA binding
a0004518molecular_functionnuclease activity
a0004519molecular_functionendonuclease activity
a0006351biological_processDNA-templated transcription
a0016787molecular_functionhydrolase activity
a0030430cellular_componenthost cell cytoplasm
a0039523biological_processsymbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
a0039657biological_processsymbiont-mediated suppression of host gene expression
a0042025cellular_componenthost cell nucleus
a0046872molecular_functionmetal ion binding
a0075523biological_processviral translational frameshifting
a0075526biological_processcap snatching
b0000166molecular_functionnucleotide binding
b0001172biological_processRNA-templated transcription
b0003968molecular_functionRNA-directed RNA polymerase activity
b0006351biological_processDNA-templated transcription
b0016740molecular_functiontransferase activity
b0016779molecular_functionnucleotidyltransferase activity
b0019083biological_processviral transcription
b0030430cellular_componenthost cell cytoplasm
b0039523biological_processsymbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
b0039657biological_processsymbiont-mediated suppression of host gene expression
b0039694biological_processviral RNA genome replication
b0042025cellular_componenthost cell nucleus
b0046872molecular_functionmetal ion binding
c0001172biological_processRNA-templated transcription
c0003723molecular_functionRNA binding
c0003968molecular_functionRNA-directed RNA polymerase activity
c0006351biological_processDNA-templated transcription
c0006370biological_process7-methylguanosine mRNA capping
c0006397biological_processmRNA processing
c0019083biological_processviral transcription
c0033650cellular_componenthost cell mitochondrion
c0039523biological_processsymbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
c0039657biological_processsymbiont-mediated suppression of host gene expression
c0042025cellular_componenthost cell nucleus
c0044423cellular_componentvirion component
c0075526biological_processcap snatching
Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DNDPSDYVEqdDI
ChainResidueDetails
CASP136-ILE148

site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPA
ChainResidueDetails
ATYR2971-ALA2977
ATYR2993-SER2999
ATYR3000-SER3006
ATYR3006
ATYR3006-SER3013
ATYR3014-SER3020

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YVCTAPH
ChainResidueDetails
ITYR112-HIS118

site_idPS00446
Number of Residues41
DetailsRNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSIRRvfiaevpiiAidwVqidaNsSvlhDEfIAhRLGLIP
ChainResidueDetails
CASN32-PRO72

site_idPS00466
Number of Residues38
DetailsZF_TFIIS_1 Zinc finger TFIIS-type signature. CqkCghkeavffqSHSARaEDAmrlyyvCtaph.CghrW
ChainResidueDetails
ICYS86-TRP123

site_idPS01030
Number of Residues27
DetailsRNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCQECNNMLypkedkenrillyaCrnC
ChainResidueDetails
IPHE16-CYS42

site_idPS01110
Number of Residues14
DetailsRNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPEHvvMtkEE
ChainResidueDetails
EHIS142-GLU155

site_idPS01111
Number of Residues15
DetailsRNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARvLGtRAlQ
ChainResidueDetails
FTHR58-GLN72

site_idPS01112
Number of Residues10
DetailsRNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPVrCFTCG
ChainResidueDetails
JILE2-GLY11

site_idPS01154
Number of Residues32
DetailsRNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. InkEdHTLgNiIksqLlkdpqVlfagYkvpHP
ChainResidueDetails
KILE35-PRO66

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
ChainResidueDetails
BGLY932-THR944

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues31
DetailsDomain: {"description":"KOW 2"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues31
DetailsDomain: {"description":"KOW 3"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues33
DetailsDomain: {"description":"KOW 4"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues33
DetailsDomain: {"description":"KOW 5"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28892040","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5OIK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"O55201","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues45
DetailsZinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues38
DetailsRegion: {"description":"Interaction with SUPT5H"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsModified residue: {"description":"N-acetylalanine","evidences":[{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI29
Number of Residues42
DetailsZinc finger: {"description":"TFIIS-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI30
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10145","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI31
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

PDB statisticsPDBj update infoContact PDBjnumon