9DSO

CRYO-EM STRUCTURE OF SACCHAROMYCES CEREVISIAE RAT1-RAI1-RTT103 COMPLEX

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000398	biological_process	mRNA splicing, via spliceosome
A	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A	0000956	biological_process	nuclear-transcribed mRNA catabolic process
A	0003676	molecular_function	nucleic acid binding
A	0003723	molecular_function	RNA binding
A	0003729	molecular_function	mRNA binding
A	0004518	molecular_function	nuclease activity
A	0004527	molecular_function	exonuclease activity
A	0004534	molecular_function	5'-3' RNA exonuclease activity
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005739	cellular_component	mitochondrion
A	0006139	biological_process	nucleobase-containing compound metabolic process
A	0006351	biological_process	DNA-templated transcription
A	0006353	biological_process	DNA-templated transcription termination
A	0006364	biological_process	rRNA processing
A	0006397	biological_process	mRNA processing
A	0016787	molecular_function	hydrolase activity
A	0019843	molecular_function	rRNA binding
A	0030846	biological_process	termination of RNA polymerase II transcription, poly(A)-coupled
A	0030847	biological_process	termination of RNA polymerase II transcription, exosome-dependent
A	0034244	biological_process	negative regulation of transcription elongation by RNA polymerase II
A	0043144	biological_process	sno(s)RNA processing
A	0071028	biological_process	nuclear mRNA surveillance
A	0071035	biological_process	nuclear polyadenylation-dependent rRNA catabolic process
A	0110155	biological_process	NAD-cap decapping
A	1904595	biological_process	positive regulation of termination of RNA polymerase II transcription
B	0000166	molecular_function	nucleotide binding
B	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
B	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
B	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
B	0000956	biological_process	nuclear-transcribed mRNA catabolic process
B	0003723	molecular_function	RNA binding
B	0004518	molecular_function	nuclease activity
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005829	cellular_component	cytosol
B	0006351	biological_process	DNA-templated transcription
B	0006353	biological_process	DNA-templated transcription termination
B	0006364	biological_process	rRNA processing
B	0006397	biological_process	mRNA processing
B	0016787	molecular_function	hydrolase activity
B	0030234	molecular_function	enzyme regulator activity
B	0030846	biological_process	termination of RNA polymerase II transcription, poly(A)-coupled
B	0031087	biological_process	deadenylation-independent decapping of nuclear-transcribed mRNA
B	0034353	molecular_function	mRNA 5'-diphosphatase activity
B	0046872	molecular_function	metal ion binding
B	0071035	biological_process	nuclear polyadenylation-dependent rRNA catabolic process
B	0110152	molecular_function	RNA NAD+-cap (NAD+-forming) hydrolase activity
B	0110155	biological_process	NAD-cap decapping
B	1904595	biological_process	positive regulation of termination of RNA polymerase II transcription
B	1990174	molecular_function	phosphodiesterase decapping endonuclease activity
C	0000785	cellular_component	chromatin
C	0000993	molecular_function	RNA polymerase II complex binding
C	0003677	molecular_function	DNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0006351	biological_process	DNA-templated transcription
C	0010526	biological_process	transposable element silencing
C	0031124	biological_process	mRNA 3'-end processing
C	0035861	cellular_component	site of double-strand break
C	0099122	molecular_function	RNA polymerase II C-terminal domain binding
C	1990269	molecular_function	RNA polymerase II C-terminal domain phosphoserine binding

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"O13836","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"O70348","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI3
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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