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9C5B

AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map

Functional Information from GO Data
ChainGOidnamespacecontents
A0000139cellular_componentGolgi membrane
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0002090biological_processregulation of receptor internalization
A0003723molecular_functionRNA binding
A0003924molecular_functionGTPase activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005794cellular_componentGolgi apparatus
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0005925cellular_componentfocal adhesion
A0006878biological_processintracellular copper ion homeostasis
A0006886biological_processintracellular protein transport
A0012505cellular_componentendomembrane system
A0014069cellular_componentpostsynaptic density
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0016192biological_processvesicle-mediated transport
A0016787molecular_functionhydrolase activity
A0019904molecular_functionprotein domain specific binding
A0030017cellular_componentsarcomere
A0031252cellular_componentcell leading edge
A0032991cellular_componentprotein-containing complex
A0034315biological_processregulation of Arp2/3 complex-mediated actin nucleation
A0043005cellular_componentneuron projection
A0045202cellular_componentsynapse
A0060292biological_processlong-term synaptic depression
A0070062cellular_componentextracellular exosome
A0097061biological_processdendritic spine organization
A0098586biological_processcellular response to virus
A1990386biological_processmitotic cleavage furrow ingression
B0006886biological_processintracellular protein transport
B0015031biological_processprotein transport
B0016192biological_processvesicle-mediated transport
B0030117cellular_componentmembrane coat
B0030276molecular_functionclathrin binding
C0000139cellular_componentGolgi membrane
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0002090biological_processregulation of receptor internalization
C0003723molecular_functionRNA binding
C0003924molecular_functionGTPase activity
C0005515molecular_functionprotein binding
C0005525molecular_functionGTP binding
C0005737cellular_componentcytoplasm
C0005794cellular_componentGolgi apparatus
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0005925cellular_componentfocal adhesion
C0006878biological_processintracellular copper ion homeostasis
C0006886biological_processintracellular protein transport
C0012505cellular_componentendomembrane system
C0014069cellular_componentpostsynaptic density
C0015031biological_processprotein transport
C0016020cellular_componentmembrane
C0016192biological_processvesicle-mediated transport
C0016787molecular_functionhydrolase activity
C0019904molecular_functionprotein domain specific binding
C0030017cellular_componentsarcomere
C0031252cellular_componentcell leading edge
C0032991cellular_componentprotein-containing complex
C0034315biological_processregulation of Arp2/3 complex-mediated actin nucleation
C0043005cellular_componentneuron projection
C0045202cellular_componentsynapse
C0060292biological_processlong-term synaptic depression
C0070062cellular_componentextracellular exosome
C0097061biological_processdendritic spine organization
C0098586biological_processcellular response to virus
C1990386biological_processmitotic cleavage furrow ingression
D0006886biological_processintracellular protein transport
D0015031biological_processprotein transport
D0016192biological_processvesicle-mediated transport
D0030117cellular_componentmembrane coat
D0030123cellular_componentAP-3 adaptor complex
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005764cellular_componentlysosome
M0005765cellular_componentlysosomal membrane
M0005769cellular_componentearly endosome
M0005794cellular_componentGolgi apparatus
M0006622biological_processprotein targeting to lysosome
M0006886biological_processintracellular protein transport
M0006897biological_processendocytosis
M0008089biological_processanterograde axonal transport
M0015031biological_processprotein transport
M0016020cellular_componentmembrane
M0016192biological_processvesicle-mediated transport
M0030123cellular_componentAP-3 adaptor complex
M0030131cellular_componentclathrin adaptor complex
M0030659cellular_componentcytoplasmic vesicle membrane
M0031267molecular_functionsmall GTPase binding
M0031410cellular_componentcytoplasmic vesicle
M0035654biological_processclathrin-coated vesicle cargo loading, AP-3-mediated
M0048490biological_processanterograde synaptic vesicle transport
M0060155biological_processplatelet dense granule organization
M0098837cellular_componentpostsynaptic recycling endosome
M0098884biological_processpostsynaptic neurotransmitter receptor internalization
M1903232biological_processmelanosome assembly
M1904115cellular_componentaxon cytoplasm
S0005515molecular_functionprotein binding
S0005769cellular_componentearly endosome
S0005794cellular_componentGolgi apparatus
S0006886biological_processintracellular protein transport
S0006896biological_processGolgi to vacuole transport
S0008089biological_processanterograde axonal transport
S0008286biological_processinsulin receptor signaling pathway
S0015031biological_processprotein transport
S0016020cellular_componentmembrane
S0016183biological_processsynaptic vesicle coating
S0016192biological_processvesicle-mediated transport
S0030117cellular_componentmembrane coat
S0030119cellular_componentAP-type membrane coat adaptor complex
S0030123cellular_componentAP-3 adaptor complex
S0030133cellular_componenttransport vesicle
S0030659cellular_componentcytoplasmic vesicle membrane
S0031410cellular_componentcytoplasmic vesicle
S0035654biological_processclathrin-coated vesicle cargo loading, AP-3-mediated
S0036465biological_processsynaptic vesicle recycling
S0048490biological_processanterograde synaptic vesicle transport
S0060155biological_processplatelet dense granule organization
S0098793cellular_componentpresynapse
S1903232biological_processmelanosome assembly
S1904115cellular_componentaxon cytoplasm
Functional Information from PROSITE/UniProt
site_idPS00989
Number of Residues11
DetailsCLAT_ADAPTOR_S Clathrin adaptor complexes small chain signature. LIYRhyatLYF
ChainResidueDetails
SLEU63-PHE73

site_idPS00990
Number of Residues21
DetailsCLAT_ADAPTOR_M_1 Clathrin adaptor complexes medium chain signature 1. IPWRra.GvkYtnNeAYFDVVE
ChainResidueDetails
MILE165-GLU185

site_idPS00991
Number of Residues15
DetailsCLAT_ADAPTOR_M_2 Clathrin adaptor complexes medium chain signature 2. LsFIPPdGnFrLisY
ChainResidueDetails
MLEU248-TYR262

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER276
CGLY24

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER609
CASN126

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:15308674, ECO:0000269|PubMed:7990966, ECO:0000269|Ref.34, ECO:0007744|PDB:1HUR, ECO:0007744|PDB:1RE0, ECO:0007744|PDB:3O47
ChainResidueDetails
AALA160
CALA160

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylglycine; alternate => ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895
ChainResidueDetails
AGLY2
CGLY2

site_idSWS_FT_FI5
Number of Residues2
DetailsLIPID: N-myristoyl glycine; alternate => ECO:0000269|PubMed:20213681, ECO:0000269|PubMed:23535599, ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:25807930
ChainResidueDetails
AGLY2
CGLY2

237992

PDB entries from 2025-06-25

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