8XZV

Architecture of the spinach plastid-encoded RNA polymerase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed RNA polymerase activity
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0009507	cellular_component	chloroplast
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0046983	molecular_function	protein dimerization activity
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0003677	molecular_function	DNA binding
B	0003899	molecular_function	DNA-directed RNA polymerase activity
B	0006351	biological_process	DNA-templated transcription
B	0006354	biological_process	DNA-templated transcription elongation
B	0009507	cellular_component	chloroplast
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0032549	molecular_function	ribonucleoside binding
B	0034062	molecular_function	5'-3' RNA polymerase activity
C	0000287	molecular_function	magnesium ion binding
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed RNA polymerase activity
C	0006351	biological_process	DNA-templated transcription
C	0008270	molecular_function	zinc ion binding
C	0009507	cellular_component	chloroplast
C	0016740	molecular_function	transferase activity
C	0016779	molecular_function	nucleotidyltransferase activity
C	0034062	molecular_function	5'-3' RNA polymerase activity
C	0046872	molecular_function	metal ion binding
D	0000428	cellular_component	DNA-directed RNA polymerase complex
D	0003677	molecular_function	DNA binding
D	0003899	molecular_function	DNA-directed RNA polymerase activity
D	0006351	biological_process	DNA-templated transcription
D	0008270	molecular_function	zinc ion binding
D	0009507	cellular_component	chloroplast
D	0016740	molecular_function	transferase activity
D	0016779	molecular_function	nucleotidyltransferase activity
D	0034062	molecular_function	5'-3' RNA polymerase activity
D	0046872	molecular_function	metal ion binding
E	0009507	cellular_component	chloroplast
E	0009658	biological_process	chloroplast organization
E	0016301	molecular_function	kinase activity
E	0016740	molecular_function	transferase activity
E	0042644	cellular_component	chloroplast nucleoid
E	0042793	biological_process	plastid transcription
F	0009507	cellular_component	chloroplast
F	0009579	cellular_component	thylakoid
F	0009657	biological_process	plastid organization
F	0015035	molecular_function	protein-disulfide reductase activity
F	0015036	molecular_function	disulfide oxidoreductase activity
F	0016491	molecular_function	oxidoreductase activity
F	0045454	biological_process	cell redox homeostasis
G	0005634	cellular_component	nucleus
G	0006355	biological_process	regulation of DNA-templated transcription
G	0009416	biological_process	response to light stimulus
G	0009507	cellular_component	chloroplast
G	0042793	biological_process	plastid transcription
G	0045893	biological_process	positive regulation of DNA-templated transcription
G	0090228	biological_process	positive regulation of red or far-red light signaling pathway
H	0009535	cellular_component	chloroplast thylakoid membrane
H	0048564	biological_process	photosystem I assembly
I	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
I	0008168	molecular_function	methyltransferase activity
I	0009534	cellular_component	chloroplast thylakoid
I	0009658	biological_process	chloroplast organization
I	0010027	biological_process	thylakoid membrane organization
I	0016279	molecular_function	protein-lysine N-methyltransferase activity
I	0016740	molecular_function	transferase activity
I	0032259	biological_process	methylation
I	0042793	biological_process	plastid transcription
J	0005524	molecular_function	ATP binding
J	0005737	cellular_component	cytoplasm
J	0008360	biological_process	regulation of cell shape
J	0009058	biological_process	biosynthetic process
J	0009507	cellular_component	chloroplast
J	0009658	biological_process	chloroplast organization
J	0016874	molecular_function	ligase activity
J	0016881	molecular_function	acid-amino acid ligase activity
J	0051301	biological_process	cell division
K	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
L	0004784	molecular_function	superoxide dismutase activity
L	0006801	biological_process	superoxide metabolic process
L	0009416	biological_process	response to light stimulus
L	0009507	cellular_component	chloroplast
L	0016491	molecular_function	oxidoreductase activity
L	0019430	biological_process	removal of superoxide radicals
L	0042644	cellular_component	chloroplast nucleoid
L	0046872	molecular_function	metal ion binding
M	0004784	molecular_function	superoxide dismutase activity
M	0006801	biological_process	superoxide metabolic process
M	0006950	biological_process	response to stress
M	0009507	cellular_component	chloroplast
M	0016491	molecular_function	oxidoreductase activity
M	0019430	biological_process	removal of superoxide radicals
M	0042644	cellular_component	chloroplast nucleoid
M	0046872	molecular_function	metal ion binding
N	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
N	0003676	molecular_function	nucleic acid binding
N	0003723	molecular_function	RNA binding
N	0009507	cellular_component	chloroplast
O	0000428	cellular_component	DNA-directed RNA polymerase complex
O	0003677	molecular_function	DNA binding
O	0003899	molecular_function	DNA-directed RNA polymerase activity
O	0005737	cellular_component	cytoplasm
O	0006351	biological_process	DNA-templated transcription
O	0009507	cellular_component	chloroplast
O	0016740	molecular_function	transferase activity
O	0016779	molecular_function	nucleotidyltransferase activity
O	0034062	molecular_function	5'-3' RNA polymerase activity
O	0046983	molecular_function	protein dimerization activity
P	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
P	0042793	biological_process	plastid transcription
R	0009507	cellular_component	chloroplast
R	0009579	cellular_component	thylakoid
R	0009657	biological_process	plastid organization
R	0015035	molecular_function	protein-disulfide reductase activity
R	0015036	molecular_function	disulfide oxidoreductase activity
R	0016491	molecular_function	oxidoreductase activity
R	0045454	biological_process	cell redox homeostasis

Functional Information from PROSITE/UniProt

site_id	PS00088
Number of Residues	8
Details	SOD_MN Manganese and iron superoxide dismutases signature. DvWEHAYY

Chain	Residue	Details
L	ASP232-TYR239
M	ASP221-TYR228

---

site_id	PS00213
Number of Residues	14
Details	LIPOCALIN Lipocalin signature. GFNqiQFEGFWRFI

Chain	Residue	Details
B	GLY14-ILE27

---

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKVAGrHGNKGI

Chain	Residue	Details
B	GLY817-ILE829

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	7
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01323","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01324","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---