8VLM
Crystal structure of the yeast cytosine deaminase (yCD) E64V-M100W heterodimer
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004131 | molecular_function | cytosine deaminase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008655 | biological_process | pyrimidine-containing compound salvage |
| A | 0008835 | molecular_function | diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0019858 | biological_process | cytosine metabolic process |
| A | 0044206 | biological_process | UMP salvage |
| A | 0046087 | biological_process | cytidine metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004131 | molecular_function | cytosine deaminase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0008655 | biological_process | pyrimidine-containing compound salvage |
| B | 0008835 | molecular_function | diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0019858 | biological_process | cytosine metabolic process |
| B | 0044206 | biological_process | UMP salvage |
| B | 0046087 | biological_process | cytidine metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004131 | molecular_function | cytosine deaminase activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0008270 | molecular_function | zinc ion binding |
| C | 0008655 | biological_process | pyrimidine-containing compound salvage |
| C | 0008835 | molecular_function | diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0019858 | biological_process | cytosine metabolic process |
| C | 0044206 | biological_process | UMP salvage |
| C | 0046087 | biological_process | cytidine metabolic process |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004131 | molecular_function | cytosine deaminase activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0008270 | molecular_function | zinc ion binding |
| D | 0008655 | biological_process | pyrimidine-containing compound salvage |
| D | 0008835 | molecular_function | diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0019858 | biological_process | cytosine metabolic process |
| D | 0044206 | biological_process | UMP salvage |
| D | 0046087 | biological_process | cytidine metabolic process |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PROSITE/UniProt
| site_id | PS00903 |
| Number of Residues | 37 |
| Details | CYT_DCMP_DEAMINASES_1 Cytidine and deoxycytidylate deaminases zinc-binding region signature. HGEisTLencgrlegkvykdttlyttls............PCdm......CtgaI |
| Chain | Residue | Details |
| B | HIS62-ILE98 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 480 |
| Details | Domain: {"description":"CMP/dCMP-type deaminase","evidences":[{"source":"PROSITE-ProRule","id":"PRU01083","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"12637534","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1UAQ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12637534","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12906827","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1P6O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UAQ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12637534","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12906827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15879217","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1OX7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1P6O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1RB7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UAQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YSB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YSD","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 5 |
| Details | M-CSA 636 |
| Chain | Residue | Details |
| B | HIS62 | metal ligand |
| B | GLU64 | proton acceptor, proton donor |
| B | SER89 | electrostatic stabiliser |
| B | CYS91 | metal ligand |
| B | CYS94 | metal ligand |
| site_id | MCSA2 |
| Number of Residues | 5 |
| Details | M-CSA 636 |
| Chain | Residue | Details |
| D | HIS62 | metal ligand |
| D | GLU64 | proton acceptor, proton donor |
| D | SER89 | electrostatic stabiliser |
| D | CYS91 | metal ligand |
| D | CYS94 | metal ligand |
