| Chain | GOid | namespace | contents |
| A | 0004672 | molecular_function | protein kinase activity |
| A | 0004674 | molecular_function | protein serine/threonine kinase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005768 | cellular_component | endosome |
| A | 0005770 | cellular_component | late endosome |
| A | 0005776 | cellular_component | autophagosome |
| A | 0005829 | cellular_component | cytosol |
| A | 0005930 | cellular_component | axoneme |
| A | 0006338 | biological_process | chromatin remodeling |
| A | 0006468 | biological_process | protein phosphorylation |
| A | 0006622 | biological_process | protein targeting to lysosome |
| A | 0006623 | biological_process | protein targeting to vacuole |
| A | 0010506 | biological_process | regulation of autophagy |
| A | 0015630 | cellular_component | microtubule cytoskeleton |
| A | 0016020 | cellular_component | membrane |
| A | 0016236 | biological_process | macroautophagy |
| A | 0016241 | biological_process | regulation of macroautophagy |
| A | 0016310 | biological_process | phosphorylation |
| A | 0030670 | cellular_component | phagocytic vesicle membrane |
| A | 0032465 | biological_process | regulation of cytokinesis |
| A | 0032801 | biological_process | receptor catabolic process |
| A | 0034271 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type I |
| A | 0034272 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type II |
| A | 0035032 | cellular_component | phosphatidylinositol 3-kinase complex, class III |
| A | 0036092 | biological_process | phosphatidylinositol-3-phosphate biosynthetic process |
| A | 0042149 | biological_process | cellular response to glucose starvation |
| A | 0043231 | cellular_component | intracellular membrane-bounded organelle |
| A | 0043491 | biological_process | phosphatidylinositol 3-kinase/protein kinase B signal transduction |
| A | 0044024 | molecular_function | histone H2AS1 kinase activity |
| A | 0045022 | biological_process | early endosome to late endosome transport |
| A | 0045324 | biological_process | late endosome to vacuole transport |
| A | 0071561 | cellular_component | nucleus-vacuole junction |
| A | 0097352 | biological_process | autophagosome maturation |
| A | 0106310 | molecular_function | protein serine kinase activity |
| B | 0000045 | biological_process | autophagosome assembly |
| B | 0000407 | cellular_component | phagophore assembly site |
| B | 0004672 | molecular_function | protein kinase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005768 | cellular_component | endosome |
| B | 0005770 | cellular_component | late endosome |
| B | 0005776 | cellular_component | autophagosome |
| B | 0005777 | cellular_component | peroxisome |
| B | 0005829 | cellular_component | cytosol |
| B | 0005930 | cellular_component | axoneme |
| B | 0006497 | biological_process | protein lipidation |
| B | 0006622 | biological_process | protein targeting to lysosome |
| B | 0006629 | biological_process | lipid metabolic process |
| B | 0006897 | biological_process | endocytosis |
| B | 0006914 | biological_process | autophagy |
| B | 0009267 | biological_process | cellular response to starvation |
| B | 0010506 | biological_process | regulation of autophagy |
| B | 0016020 | cellular_component | membrane |
| B | 0016236 | biological_process | macroautophagy |
| B | 0016241 | biological_process | regulation of macroautophagy |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016303 | molecular_function | 1-phosphatidylinositol-3-kinase activity |
| B | 0016310 | biological_process | phosphorylation |
| B | 0030496 | cellular_component | midbody |
| B | 0030670 | cellular_component | phagocytic vesicle membrane |
| B | 0032465 | biological_process | regulation of cytokinesis |
| B | 0034271 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type I |
| B | 0034272 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type II |
| B | 0034497 | biological_process | protein localization to phagophore assembly site |
| B | 0035032 | cellular_component | phosphatidylinositol 3-kinase complex, class III |
| B | 0036092 | biological_process | phosphatidylinositol-3-phosphate biosynthetic process |
| B | 0042149 | biological_process | cellular response to glucose starvation |
| B | 0044754 | cellular_component | autolysosome |
| B | 0044829 | biological_process | positive regulation by host of viral genome replication |
| B | 0045022 | biological_process | early endosome to late endosome transport |
| B | 0045335 | cellular_component | phagocytic vesicle |
| B | 0046854 | biological_process | phosphatidylinositol phosphate biosynthetic process |
| B | 0048015 | biological_process | phosphatidylinositol-mediated signaling |
| B | 0048488 | biological_process | synaptic vesicle endocytosis |
| B | 0051301 | biological_process | cell division |
| B | 0052742 | molecular_function | phosphatidylinositol kinase activity |
| B | 0097352 | biological_process | autophagosome maturation |
| B | 0098794 | cellular_component | postsynapse |
| B | 0098830 | cellular_component | presynaptic endosome |
| B | 0098845 | cellular_component | postsynaptic endosome |
| B | 0098978 | cellular_component | glutamatergic synapse |
| B | 0098982 | cellular_component | GABA-ergic synapse |
| C | 0000045 | biological_process | autophagosome assembly |
| C | 0000407 | cellular_component | phagophore assembly site |
| C | 0000421 | cellular_component | autophagosome membrane |
| C | 0000423 | biological_process | mitophagy |
| C | 0001932 | biological_process | regulation of protein phosphorylation |
| C | 0001933 | biological_process | negative regulation of protein phosphorylation |
| C | 0001934 | biological_process | positive regulation of protein phosphorylation |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005776 | cellular_component | autophagosome |
| C | 0005783 | cellular_component | endoplasmic reticulum |
| C | 0005789 | cellular_component | endoplasmic reticulum membrane |
| C | 0005829 | cellular_component | cytosol |
| C | 0005930 | cellular_component | axoneme |
| C | 0006622 | biological_process | protein targeting to lysosome |
| C | 0006914 | biological_process | autophagy |
| C | 0008333 | biological_process | endosome to lysosome transport |
| C | 0009267 | biological_process | cellular response to starvation |
| C | 0010608 | biological_process | post-transcriptional regulation of gene expression |
| C | 0016020 | cellular_component | membrane |
| C | 0016236 | biological_process | macroautophagy |
| C | 0016240 | biological_process | autophagosome membrane docking |
| C | 0016241 | biological_process | regulation of macroautophagy |
| C | 0031410 | cellular_component | cytoplasmic vesicle |
| C | 0032991 | cellular_component | protein-containing complex |
| C | 0034045 | cellular_component | phagophore assembly site membrane |
| C | 0035014 | molecular_function | phosphatidylinositol 3-kinase regulator activity |
| C | 0035032 | cellular_component | phosphatidylinositol 3-kinase complex, class III |
| C | 0036092 | biological_process | phosphatidylinositol-3-phosphate biosynthetic process |
| C | 0042149 | biological_process | cellular response to glucose starvation |
| C | 0043491 | biological_process | phosphatidylinositol 3-kinase/protein kinase B signal transduction |
| C | 0043495 | molecular_function | protein-membrane adaptor activity |
| C | 0044233 | cellular_component | mitochondria-associated endoplasmic reticulum membrane contact site |
| C | 0045022 | biological_process | early endosome to late endosome transport |
| C | 0045087 | biological_process | innate immune response |
| C | 0045335 | cellular_component | phagocytic vesicle |
| C | 0051020 | molecular_function | GTPase binding |
| C | 0051607 | biological_process | defense response to virus |
| C | 0061635 | biological_process | regulation of protein complex stability |
| C | 0090207 | biological_process | regulation of triglyceride metabolic process |
| C | 0097352 | biological_process | autophagosome maturation |
| C | 0097629 | cellular_component | extrinsic component of omegasome membrane |
| C | 0097632 | cellular_component | extrinsic component of phagophore assembly site membrane |
| C | 0098780 | biological_process | response to mitochondrial depolarisation |
| C | 0141039 | molecular_function | phosphatidylinositol 3-kinase inhibitor activity |
| D | 0000045 | biological_process | autophagosome assembly |
| D | 0000407 | cellular_component | phagophore assembly site |
| D | 0000423 | biological_process | mitophagy |
| D | 0001666 | biological_process | response to hypoxia |
| D | 0002753 | biological_process | cytoplasmic pattern recognition receptor signaling pathway |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005739 | cellular_component | mitochondrion |
| D | 0005768 | cellular_component | endosome |
| D | 0005776 | cellular_component | autophagosome |
| D | 0005783 | cellular_component | endoplasmic reticulum |
| D | 0005789 | cellular_component | endoplasmic reticulum membrane |
| D | 0005794 | cellular_component | Golgi apparatus |
| D | 0005802 | cellular_component | trans-Golgi network |
| D | 0005829 | cellular_component | cytosol |
| D | 0006622 | biological_process | protein targeting to lysosome |
| D | 0006897 | biological_process | endocytosis |
| D | 0006914 | biological_process | autophagy |
| D | 0006915 | biological_process | apoptotic process |
| D | 0006968 | biological_process | cellular defense response |
| D | 0006995 | biological_process | cellular response to nitrogen starvation |
| D | 0007040 | biological_process | lysosome organization |
| D | 0007080 | biological_process | mitotic metaphase chromosome alignment |
| D | 0007254 | biological_process | JNK cascade |
| D | 0008285 | biological_process | negative regulation of cell population proliferation |
| D | 0009410 | biological_process | response to xenobiotic stimulus |
| D | 0010008 | cellular_component | endosome membrane |
| D | 0010040 | biological_process | response to iron(II) ion |
| D | 0010288 | biological_process | response to lead ion |
| D | 0010506 | biological_process | regulation of autophagy |
| D | 0010507 | biological_process | negative regulation of autophagy |
| D | 0010508 | biological_process | positive regulation of autophagy |
| D | 0010613 | biological_process | positive regulation of cardiac muscle hypertrophy |
| D | 0016020 | cellular_component | membrane |
| D | 0016236 | biological_process | macroautophagy |
| D | 0016241 | biological_process | regulation of macroautophagy |
| D | 0016604 | cellular_component | nuclear body |
| D | 0019901 | molecular_function | protein kinase binding |
| D | 0030425 | cellular_component | dendrite |
| D | 0030674 | molecular_function | protein-macromolecule adaptor activity |
| D | 0031410 | cellular_component | cytoplasmic vesicle |
| D | 0031625 | molecular_function | ubiquitin protein ligase binding |
| D | 0031667 | biological_process | response to nutrient levels |
| D | 0031966 | cellular_component | mitochondrial membrane |
| D | 0032465 | biological_process | regulation of cytokinesis |
| D | 0032473 | cellular_component | cytoplasmic side of mitochondrial outer membrane |
| D | 0032801 | biological_process | receptor catabolic process |
| D | 0032991 | cellular_component | protein-containing complex |
| D | 0033197 | biological_process | response to vitamin E |
| D | 0034198 | biological_process | cellular response to amino acid starvation |
| D | 0034271 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type I |
| D | 0034272 | cellular_component | phosphatidylinositol 3-kinase complex, class III, type II |
| D | 0035032 | cellular_component | phosphatidylinositol 3-kinase complex, class III |
| D | 0036092 | biological_process | phosphatidylinositol-3-phosphate biosynthetic process |
| D | 0038066 | biological_process | p38MAPK cascade |
| D | 0039521 | biological_process | suppression by virus of host autophagy |
| D | 0042149 | biological_process | cellular response to glucose starvation |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0043066 | biological_process | negative regulation of apoptotic process |
| D | 0043069 | biological_process | negative regulation of programmed cell death |
| D | 0043548 | molecular_function | phosphatidylinositol 3-kinase binding |
| D | 0043652 | biological_process | engulfment of apoptotic cell |
| D | 0045022 | biological_process | early endosome to late endosome transport |
| D | 0045324 | biological_process | late endosome to vacuole transport |
| D | 0045335 | cellular_component | phagocytic vesicle |
| D | 0048666 | biological_process | neuron development |
| D | 0050435 | biological_process | amyloid-beta metabolic process |
| D | 0051020 | molecular_function | GTPase binding |
| D | 0051301 | biological_process | cell division |
| D | 0051607 | biological_process | defense response to virus |
| D | 0051707 | biological_process | response to other organism |
| D | 0051897 | biological_process | positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction |
| D | 0060090 | molecular_function | molecular adaptor activity |
| D | 0060395 | biological_process | SMAD protein signal transduction |
| D | 0062029 | biological_process | positive regulation of stress granule assembly |
| D | 0065003 | biological_process | protein-containing complex assembly |
| D | 0070301 | biological_process | cellular response to hydrogen peroxide |
| D | 0071275 | biological_process | cellular response to aluminum ion |
| D | 0071280 | biological_process | cellular response to copper ion |
| D | 0071364 | biological_process | cellular response to epidermal growth factor stimulus |
| D | 0090650 | biological_process | cellular response to oxygen-glucose deprivation |
| D | 0097352 | biological_process | autophagosome maturation |
| D | 0098780 | biological_process | response to mitochondrial depolarisation |
| D | 1902425 | biological_process | positive regulation of attachment of mitotic spindle microtubules to kinetochore |
| D | 1902902 | biological_process | negative regulation of autophagosome assembly |
| D | 1905672 | biological_process | negative regulation of lysosome organization |
| D | 2000378 | biological_process | negative regulation of reactive oxygen species metabolic process |
| D | 2000786 | biological_process | positive regulation of autophagosome assembly |
| D | 2001244 | biological_process | positive regulation of intrinsic apoptotic signaling pathway |
