8QKT
Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment
This is a non-PDB format compatible entry.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| AAA | 0000786 | cellular_component | nucleosome |
| AAA | 0003677 | molecular_function | DNA binding |
| AAA | 0030527 | molecular_function | structural constituent of chromatin |
| AAA | 0046982 | molecular_function | protein heterodimerization activity |
| BBB | 0003677 | molecular_function | DNA binding |
| BBB | 0030527 | molecular_function | structural constituent of chromatin |
| BBB | 0046982 | molecular_function | protein heterodimerization activity |
| CCC | 0000786 | cellular_component | nucleosome |
| CCC | 0003677 | molecular_function | DNA binding |
| CCC | 0030527 | molecular_function | structural constituent of chromatin |
| CCC | 0046982 | molecular_function | protein heterodimerization activity |
| DDD | 0000786 | cellular_component | nucleosome |
| DDD | 0003677 | molecular_function | DNA binding |
| DDD | 0030527 | molecular_function | structural constituent of chromatin |
| DDD | 0046982 | molecular_function | protein heterodimerization activity |
| EEE | 0000786 | cellular_component | nucleosome |
| EEE | 0003677 | molecular_function | DNA binding |
| EEE | 0030527 | molecular_function | structural constituent of chromatin |
| EEE | 0046982 | molecular_function | protein heterodimerization activity |
| FFF | 0003677 | molecular_function | DNA binding |
| FFF | 0030527 | molecular_function | structural constituent of chromatin |
| FFF | 0046982 | molecular_function | protein heterodimerization activity |
| GGG | 0000786 | cellular_component | nucleosome |
| GGG | 0003677 | molecular_function | DNA binding |
| GGG | 0030527 | molecular_function | structural constituent of chromatin |
| GGG | 0046982 | molecular_function | protein heterodimerization activity |
| HHH | 0000786 | cellular_component | nucleosome |
| HHH | 0003677 | molecular_function | DNA binding |
| HHH | 0030527 | molecular_function | structural constituent of chromatin |
| HHH | 0046982 | molecular_function | protein heterodimerization activity |
| KKK | 0000786 | cellular_component | nucleosome |
| KKK | 0003677 | molecular_function | DNA binding |
| KKK | 0030527 | molecular_function | structural constituent of chromatin |
| KKK | 0046982 | molecular_function | protein heterodimerization activity |
| LLL | 0003677 | molecular_function | DNA binding |
| LLL | 0030527 | molecular_function | structural constituent of chromatin |
| LLL | 0046982 | molecular_function | protein heterodimerization activity |
| MMM | 0000786 | cellular_component | nucleosome |
| MMM | 0003677 | molecular_function | DNA binding |
| MMM | 0030527 | molecular_function | structural constituent of chromatin |
| MMM | 0046982 | molecular_function | protein heterodimerization activity |
| NNN | 0000786 | cellular_component | nucleosome |
| NNN | 0003677 | molecular_function | DNA binding |
| NNN | 0030527 | molecular_function | structural constituent of chromatin |
| NNN | 0046982 | molecular_function | protein heterodimerization activity |
| OOO | 0000786 | cellular_component | nucleosome |
| OOO | 0003677 | molecular_function | DNA binding |
| OOO | 0030527 | molecular_function | structural constituent of chromatin |
| OOO | 0046982 | molecular_function | protein heterodimerization activity |
| PPP | 0003677 | molecular_function | DNA binding |
| PPP | 0030527 | molecular_function | structural constituent of chromatin |
| PPP | 0046982 | molecular_function | protein heterodimerization activity |
| QQQ | 0000786 | cellular_component | nucleosome |
| QQQ | 0003677 | molecular_function | DNA binding |
| QQQ | 0030527 | molecular_function | structural constituent of chromatin |
| QQQ | 0046982 | molecular_function | protein heterodimerization activity |
| RRR | 0000786 | cellular_component | nucleosome |
| RRR | 0003677 | molecular_function | DNA binding |
| RRR | 0030527 | molecular_function | structural constituent of chromatin |
| RRR | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PROSITE/UniProt
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| CCC | ALA21-VAL27 | |
| GGG | ALA21-VAL27 |
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
| Chain | Residue | Details |
| DDD | ARG89-GLY111 | |
| HHH | ARG89-GLY111 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| AAA | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000269|PubMed:19783980 |
| Chain | Residue | Details |
| AAA | TYR41 | |
| EEE | TYR41 | |
| KKK | TYR41 | |
| OOO | TYR41 | |
| RRR | LYS113 | |
| RRR | LYS117 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435 |
| Chain | Residue | Details |
| AAA | LYS56 | |
| EEE | LYS56 | |
| KKK | LYS56 | |
| OOO | LYS56 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:20850016 |
| Chain | Residue | Details |
| AAA | SER57 | |
| EEE | SER57 | |
| KKK | SER57 | |
| OOO | SER57 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:16267050, ECO:0000269|PubMed:17194708 |
| Chain | Residue | Details |
| AAA | LYS64 | |
| EEE | LYS64 | |
| KKK | LYS64 | |
| OOO | LYS64 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435, ECO:0000269|PubMed:29211711 |
| Chain | Residue | Details |
| AAA | LYS79 | |
| EEE | LYS79 | |
| KKK | LYS79 | |
| OOO | LYS79 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphothreonine => ECO:0000269|PubMed:20850016 |
| Chain | Residue | Details |
| AAA | THR80 | |
| EEE | THR80 | |
| KKK | THR80 | |
| OOO | THR80 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243 |
| Chain | Residue | Details |
| AAA | SER86 | |
| EEE | SER86 | |
| KKK | SER86 | |
| OOO | SER86 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3 |
| Chain | Residue | Details |
| AAA | THR107 | |
| EEE | THR107 | |
| KKK | THR107 | |
| OOO | THR107 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-glutaryllysine; alternate => ECO:0000269|PubMed:31542297 |
| Chain | Residue | Details |
| AAA | LYS115 | |
| EEE | LYS115 | |
| KKK | LYS115 | |
| OOO | LYS115 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435, ECO:0000269|PubMed:27436229 |
| Chain | Residue | Details |
| AAA | LYS122 | |
| EEE | LYS122 | |
| KKK | LYS122 | |
| OOO | LYS122 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816 |
| Chain | Residue | Details |
| HHH | LYS31 | |
| RRR | LYS31 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 4 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563 |
| Chain | Residue | Details |
| HHH | LYS117 | |
| RRR | LYS117 |
