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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8QKT

Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
AAA0000786cellular_componentnucleosome
AAA0003677molecular_functionDNA binding
AAA0030527molecular_functionstructural constituent of chromatin
AAA0046982molecular_functionprotein heterodimerization activity
BBB0003677molecular_functionDNA binding
BBB0030527molecular_functionstructural constituent of chromatin
BBB0046982molecular_functionprotein heterodimerization activity
CCC0000786cellular_componentnucleosome
CCC0003677molecular_functionDNA binding
CCC0030527molecular_functionstructural constituent of chromatin
CCC0046982molecular_functionprotein heterodimerization activity
DDD0000786cellular_componentnucleosome
DDD0003677molecular_functionDNA binding
DDD0030527molecular_functionstructural constituent of chromatin
DDD0046982molecular_functionprotein heterodimerization activity
EEE0000786cellular_componentnucleosome
EEE0003677molecular_functionDNA binding
EEE0030527molecular_functionstructural constituent of chromatin
EEE0046982molecular_functionprotein heterodimerization activity
FFF0003677molecular_functionDNA binding
FFF0030527molecular_functionstructural constituent of chromatin
FFF0046982molecular_functionprotein heterodimerization activity
GGG0000786cellular_componentnucleosome
GGG0003677molecular_functionDNA binding
GGG0030527molecular_functionstructural constituent of chromatin
GGG0046982molecular_functionprotein heterodimerization activity
HHH0000786cellular_componentnucleosome
HHH0003677molecular_functionDNA binding
HHH0030527molecular_functionstructural constituent of chromatin
HHH0046982molecular_functionprotein heterodimerization activity
KKK0000786cellular_componentnucleosome
KKK0003677molecular_functionDNA binding
KKK0030527molecular_functionstructural constituent of chromatin
KKK0046982molecular_functionprotein heterodimerization activity
LLL0003677molecular_functionDNA binding
LLL0030527molecular_functionstructural constituent of chromatin
LLL0046982molecular_functionprotein heterodimerization activity
MMM0000786cellular_componentnucleosome
MMM0003677molecular_functionDNA binding
MMM0030527molecular_functionstructural constituent of chromatin
MMM0046982molecular_functionprotein heterodimerization activity
NNN0000786cellular_componentnucleosome
NNN0003677molecular_functionDNA binding
NNN0030527molecular_functionstructural constituent of chromatin
NNN0046982molecular_functionprotein heterodimerization activity
OOO0000786cellular_componentnucleosome
OOO0003677molecular_functionDNA binding
OOO0030527molecular_functionstructural constituent of chromatin
OOO0046982molecular_functionprotein heterodimerization activity
PPP0003677molecular_functionDNA binding
PPP0030527molecular_functionstructural constituent of chromatin
PPP0046982molecular_functionprotein heterodimerization activity
QQQ0000786cellular_componentnucleosome
QQQ0003677molecular_functionDNA binding
QQQ0030527molecular_functionstructural constituent of chromatin
QQQ0046982molecular_functionprotein heterodimerization activity
RRR0000786cellular_componentnucleosome
RRR0003677molecular_functionDNA binding
RRR0030527molecular_functionstructural constituent of chromatin
RRR0046982molecular_functionprotein heterodimerization activity
Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CCCALA21-VAL27
GGGALA21-VAL27
site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
DDDARG89-GLY111
HHHARG89-GLY111
site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
AAAPRO66-ILE74
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"19783980","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues16
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29211711","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P84243","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues4
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"PubMed","id":"31542297","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27436229","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues4
DetailsModified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"UniProtKB","id":"Q64475","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine; by AMPK","evidences":[{"source":"UniProtKB","id":"Q64475","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues8
DetailsModified residue: {"description":"N6-lactoyllysine; alternate","evidences":[{"source":"PubMed","id":"31645732","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues8
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16627869","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues4
DetailsModified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine; alternate","evidences":[{"source":"PubMed","id":"24681537","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues4
DetailsModified residue: {"description":"Dimethylated arginine","evidences":[{"source":"UniProtKB","id":"Q96A08","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues8
DetailsModified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"Q96A08","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q00729","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues4
DetailsGlycosylation: {"description":"O-linked (GlcNAc) serine","evidences":[{"source":"UniProtKB","id":"P62807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"21726816","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"16307923","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16627869","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16713563","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2025-07-23

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