8Q3X
Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Kaposi Sarcoma Associated Herpesvirus LANA Peptide-Au[I] Compound)
This is a non-PDB format compatible entry.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| AAA | 0000786 | cellular_component | nucleosome |
| AAA | 0003677 | molecular_function | DNA binding |
| AAA | 0030527 | molecular_function | structural constituent of chromatin |
| AAA | 0046982 | molecular_function | protein heterodimerization activity |
| BBB | 0003677 | molecular_function | DNA binding |
| BBB | 0030527 | molecular_function | structural constituent of chromatin |
| BBB | 0046982 | molecular_function | protein heterodimerization activity |
| CCC | 0000786 | cellular_component | nucleosome |
| CCC | 0003677 | molecular_function | DNA binding |
| CCC | 0030527 | molecular_function | structural constituent of chromatin |
| CCC | 0046982 | molecular_function | protein heterodimerization activity |
| DDD | 0000786 | cellular_component | nucleosome |
| DDD | 0003677 | molecular_function | DNA binding |
| DDD | 0030527 | molecular_function | structural constituent of chromatin |
| DDD | 0046982 | molecular_function | protein heterodimerization activity |
| EEE | 0000786 | cellular_component | nucleosome |
| EEE | 0003677 | molecular_function | DNA binding |
| EEE | 0030527 | molecular_function | structural constituent of chromatin |
| EEE | 0046982 | molecular_function | protein heterodimerization activity |
| FFF | 0003677 | molecular_function | DNA binding |
| FFF | 0030527 | molecular_function | structural constituent of chromatin |
| FFF | 0046982 | molecular_function | protein heterodimerization activity |
| GGG | 0000786 | cellular_component | nucleosome |
| GGG | 0003677 | molecular_function | DNA binding |
| GGG | 0030527 | molecular_function | structural constituent of chromatin |
| GGG | 0046982 | molecular_function | protein heterodimerization activity |
| HHH | 0000786 | cellular_component | nucleosome |
| HHH | 0003677 | molecular_function | DNA binding |
| HHH | 0030527 | molecular_function | structural constituent of chromatin |
| HHH | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PROSITE/UniProt
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| CCC | ALA21-VAL27 |
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
| Chain | Residue | Details |
| DDD | ARG89-GLY111 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| AAA | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435 |
| Chain | Residue | Details |
| DDD | LYS31 | |
| DDD | LYS113 | |
| DDD | LYS117 | |
| HHH | LYS31 | |
| HHH | LYS113 | |
| HHH | LYS117 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | MOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000250|UniProtKB:Q64475 |
| Chain | Residue | Details |
| DDD | GLU32 | |
| HHH | GLU32 | |
| FFF | LYS16 | |
| FFF | LYS44 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine; by AMPK => ECO:0000250|UniProtKB:Q8CGP1 |
| Chain | Residue | Details |
| DDD | SER33 | |
| HHH | SER33 | |
| GGG | LYS74 | |
| GGG | LYS75 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-lactoyllysine; alternate => ECO:0000269|PubMed:31645732 |
| Chain | Residue | Details |
| DDD | LYS40 | |
| DDD | LYS82 | |
| HHH | LYS40 | |
| HHH | LYS82 | |
| FFF | LYS77 | |
| FFF | LYS91 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:16627869 |
| Chain | Residue | Details |
| DDD | LYS43 | |
| DDD | LYS105 | |
| HHH | LYS43 | |
| HHH | LYS105 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-(2-hydroxyisobutyryl)lysine; alternate => ECO:0000269|PubMed:24681537 |
| Chain | Residue | Details |
| DDD | LYS54 | |
| HHH | LYS54 | |
| GGG | LYS118 | |
| GGG | LYS119 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | MOD_RES: Dimethylated arginine => ECO:0000250|UniProtKB:Q96A08 |
| Chain | Residue | Details |
| DDD | ARG76 | |
| HHH | ARG76 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | MOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:Q96A08 |
| Chain | Residue | Details |
| DDD | ARG83 | |
| DDD | ARG89 | |
| HHH | ARG83 | |
| HHH | ARG89 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q00729 |
| Chain | Residue | Details |
| DDD | THR112 | |
| HHH | THR112 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | CARBOHYD: O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807 |
| Chain | Residue | Details |
| DDD | SER109 | |
| HHH | SER109 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816 |
| Chain | Residue | Details |
| DDD | LYS31 | |
| HHH | LYS31 | |
| BBB | LYS79 | |
| FFF | LYS20 | |
| FFF | LYS59 | |
| FFF | LYS79 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 4 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563 |
| Chain | Residue | Details |
| DDD | LYS117 | |
| HHH | LYS117 |
| site_id | SWS_FT_FI13 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000269|PubMed:30886146 |
| Chain | Residue | Details |
| BBB | LYS31 | |
| FFF | LYS31 |
