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8P5D

Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging

This is a non-PDB format compatible entry.
Replaces:  8BR3
Functional Information from GO Data
ChainGOidnamespacecontents
LA00002181biological_processcytoplasmic translation
LA00003723molecular_functionRNA binding
LA00003735molecular_functionstructural constituent of ribosome
LA00005840cellular_componentribosome
LA00006412biological_processtranslation
LA00022625cellular_componentcytosolic large ribosomal subunit
LA00022626cellular_componentcytosolic ribosome
LA01990904cellular_componentribonucleoprotein complex
LAA0003735molecular_functionstructural constituent of ribosome
LAA0005840cellular_componentribosome
LAA0006412biological_processtranslation
LAA0015934cellular_componentlarge ribosomal subunit
LB00003723molecular_functionRNA binding
LB00003735molecular_functionstructural constituent of ribosome
LB00005840cellular_componentribosome
LB00006412biological_processtranslation
LB00022625cellular_componentcytosolic large ribosomal subunit
LB01990904cellular_componentribonucleoprotein complex
LC00003723molecular_functionRNA binding
LC00003735molecular_functionstructural constituent of ribosome
LC00005840cellular_componentribosome
LC00006412biological_processtranslation
LC00022625cellular_componentcytosolic large ribosomal subunit
LC01990904cellular_componentribonucleoprotein complex
LCC0003723molecular_functionRNA binding
LCC0003735molecular_functionstructural constituent of ribosome
LCC0005840cellular_componentribosome
LCC0022625cellular_componentcytosolic large ribosomal subunit
LD00000027biological_processribosomal large subunit assembly
LD00003735molecular_functionstructural constituent of ribosome
LD00005737cellular_componentcytoplasm
LD00005840cellular_componentribosome
LD00006412biological_processtranslation
LD00008097molecular_function5S rRNA binding
LD00022625cellular_componentcytosolic large ribosomal subunit
LD01990904cellular_componentribonucleoprotein complex
LDD0002181biological_processcytoplasmic translation
LDD0003735molecular_functionstructural constituent of ribosome
LDD0005840cellular_componentribosome
LDD0006412biological_processtranslation
LDD0022625cellular_componentcytosolic large ribosomal subunit
LDD1990904cellular_componentribonucleoprotein complex
LE00000027biological_processribosomal large subunit assembly
LE00002181biological_processcytoplasmic translation
LE00003723molecular_functionRNA binding
LE00003735molecular_functionstructural constituent of ribosome
LE00005840cellular_componentribosome
LE00006412biological_processtranslation
LE00022625cellular_componentcytosolic large ribosomal subunit
LEE0003735molecular_functionstructural constituent of ribosome
LEE0005840cellular_componentribosome
LEE0006412biological_processtranslation
LEE0022625cellular_componentcytosolic large ribosomal subunit
LEE1990904cellular_componentribonucleoprotein complex
LF00000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LF00003723molecular_functionRNA binding
LF00003735molecular_functionstructural constituent of ribosome
LF00005840cellular_componentribosome
LF00022625cellular_componentcytosolic large ribosomal subunit
LFF0002181biological_processcytoplasmic translation
LFF0003735molecular_functionstructural constituent of ribosome
LFF0005840cellular_componentribosome
LFF0006412biological_processtranslation
LFF0022625cellular_componentcytosolic large ribosomal subunit
LFF0042273biological_processribosomal large subunit biogenesis
LG00000470biological_processmaturation of LSU-rRNA
LG00003723molecular_functionRNA binding
LG00005840cellular_componentribosome
LG00022625cellular_componentcytosolic large ribosomal subunit
LG01990904cellular_componentribonucleoprotein complex
LGG0003735molecular_functionstructural constituent of ribosome
LGG0005829cellular_componentcytosol
LGG0005840cellular_componentribosome
LGG0006412biological_processtranslation
LGG0022625cellular_componentcytosolic large ribosomal subunit
LGG1990904cellular_componentribonucleoprotein complex
LH00002181biological_processcytoplasmic translation
LH00003735molecular_functionstructural constituent of ribosome
LH00005840cellular_componentribosome
LH00006412biological_processtranslation
LH00019843molecular_functionrRNA binding
LH00022625cellular_componentcytosolic large ribosomal subunit
LH01990904cellular_componentribonucleoprotein complex
LHH0003735molecular_functionstructural constituent of ribosome
LHH0005840cellular_componentribosome
LHH0006412biological_processtranslation
LHH1990904cellular_componentribonucleoprotein complex
LI00000027biological_processribosomal large subunit assembly
LI00003735molecular_functionstructural constituent of ribosome
LI00005840cellular_componentribosome
LI00006412biological_processtranslation
LI00022625cellular_componentcytosolic large ribosomal subunit
LI01990904cellular_componentribonucleoprotein complex
LII0002181biological_processcytoplasmic translation
LII0003735molecular_functionstructural constituent of ribosome
LII0005840cellular_componentribosome
LII0006412biological_processtranslation
LII0022625cellular_componentcytosolic large ribosomal subunit
LJ00003723molecular_functionRNA binding
LJ00003735molecular_functionstructural constituent of ribosome
LJ00005840cellular_componentribosome
LJ00006412biological_processtranslation
LJ00022625cellular_componentcytosolic large ribosomal subunit
LJ01990904cellular_componentribonucleoprotein complex
LJJ0003735molecular_functionstructural constituent of ribosome
LJJ0005840cellular_componentribosome
LJJ0006412biological_processtranslation
LL00003723molecular_functionRNA binding
LL00003735molecular_functionstructural constituent of ribosome
LL00005840cellular_componentribosome
LL00006412biological_processtranslation
LL00022625cellular_componentcytosolic large ribosomal subunit
LL01990904cellular_componentribonucleoprotein complex
LLL0003735molecular_functionstructural constituent of ribosome
LLL0005840cellular_componentribosome
LLL0006412biological_processtranslation
LLL1990904cellular_componentribonucleoprotein complex
LMM0003735molecular_functionstructural constituent of ribosome
LMM0005840cellular_componentribosome
LMM0006412biological_processtranslation
LMM1990904cellular_componentribonucleoprotein complex
LN00002181biological_processcytoplasmic translation
LN00003723molecular_functionRNA binding
LN00003735molecular_functionstructural constituent of ribosome
LN00005840cellular_componentribosome
LN00006412biological_processtranslation
LN00022625cellular_componentcytosolic large ribosomal subunit
LN00022626cellular_componentcytosolic ribosome
LN01990904cellular_componentribonucleoprotein complex
LO00003729molecular_functionmRNA binding
LO00003735molecular_functionstructural constituent of ribosome
LO00005840cellular_componentribosome
LO00006412biological_processtranslation
LO00015934cellular_componentlarge ribosomal subunit
LO00017148biological_processnegative regulation of translation
LO00022625cellular_componentcytosolic large ribosomal subunit
LO01990904cellular_componentribonucleoprotein complex
LOO0003735molecular_functionstructural constituent of ribosome
LOO0005840cellular_componentribosome
LOO0006412biological_processtranslation
LOO0022625cellular_componentcytosolic large ribosomal subunit
LOO1990904cellular_componentribonucleoprotein complex
LP00002181biological_processcytoplasmic translation
LP00003735molecular_functionstructural constituent of ribosome
LP00005840cellular_componentribosome
LP00006412biological_processtranslation
LP00015934cellular_componentlarge ribosomal subunit
LP00022625cellular_componentcytosolic large ribosomal subunit
LP01990904cellular_componentribonucleoprotein complex
LPP0003735molecular_functionstructural constituent of ribosome
LPP0005840cellular_componentribosome
LPP0006412biological_processtranslation
LPP1990904cellular_componentribonucleoprotein complex
LQ00003723molecular_functionRNA binding
LQ00003735molecular_functionstructural constituent of ribosome
LQ00005840cellular_componentribosome
LQ00006412biological_processtranslation
LQ00022625cellular_componentcytosolic large ribosomal subunit
LQ01990904cellular_componentribonucleoprotein complex
LR00003723molecular_functionRNA binding
LR00003735molecular_functionstructural constituent of ribosome
LR00005840cellular_componentribosome
LR00006412biological_processtranslation
LR00022625cellular_componentcytosolic large ribosomal subunit
LR01990904cellular_componentribonucleoprotein complex
LS00003735molecular_functionstructural constituent of ribosome
LS00005840cellular_componentribosome
LS00006412biological_processtranslation
LS00022625cellular_componentcytosolic large ribosomal subunit
LS01990904cellular_componentribonucleoprotein complex
LT00003735molecular_functionstructural constituent of ribosome
LT00005840cellular_componentribosome
LT00006412biological_processtranslation
LT00022625cellular_componentcytosolic large ribosomal subunit
LT01990904cellular_componentribonucleoprotein complex
LU00002181biological_processcytoplasmic translation
LU00003723molecular_functionRNA binding
LU00003735molecular_functionstructural constituent of ribosome
LU00005840cellular_componentribosome
LU00006412biological_processtranslation
LU01990904cellular_componentribonucleoprotein complex
LV00003735molecular_functionstructural constituent of ribosome
LV00005840cellular_componentribosome
LV00006412biological_processtranslation
LV00022625cellular_componentcytosolic large ribosomal subunit
LV00070180molecular_functionlarge ribosomal subunit rRNA binding
LV01990904cellular_componentribonucleoprotein complex
LW00005840cellular_componentribosome
LX00000027biological_processribosomal large subunit assembly
LX00003735molecular_functionstructural constituent of ribosome
LX00005840cellular_componentribosome
LX00006412biological_processtranslation
LX00019843molecular_functionrRNA binding
LX00022625cellular_componentcytosolic large ribosomal subunit
LX01990904cellular_componentribonucleoprotein complex
LY00002181biological_processcytoplasmic translation
LY00003723molecular_functionRNA binding
LY00003735molecular_functionstructural constituent of ribosome
LY00005840cellular_componentribosome
LY00006412biological_processtranslation
LY00015934cellular_componentlarge ribosomal subunit
LY00022625cellular_componentcytosolic large ribosomal subunit
LY00042273biological_processribosomal large subunit biogenesis
LZ00003735molecular_functionstructural constituent of ribosome
LZ00005840cellular_componentribosome
LZ00006412biological_processtranslation
LZ00016020cellular_componentmembrane
SA00000028biological_processribosomal small subunit assembly
SA00002181biological_processcytoplasmic translation
SA00003735molecular_functionstructural constituent of ribosome
SA00005840cellular_componentribosome
SA00006412biological_processtranslation
SA00015935cellular_componentsmall ribosomal subunit
SA00022627cellular_componentcytosolic small ribosomal subunit
SA00030686cellular_component90S preribosome
SAA0003729molecular_functionmRNA binding
SAA0003735molecular_functionstructural constituent of ribosome
SAA0005840cellular_componentribosome
SAA0006412biological_processtranslation
SAA0022627cellular_componentcytosolic small ribosomal subunit
SAA1990904cellular_componentribonucleoprotein complex
SB00003735molecular_functionstructural constituent of ribosome
SB00005840cellular_componentribosome
SB00006412biological_processtranslation
SBB0003735molecular_functionstructural constituent of ribosome
SBB0005840cellular_componentribosome
SBB0006412biological_processtranslation
SC00003723molecular_functionRNA binding
SC00003735molecular_functionstructural constituent of ribosome
SC00005737cellular_componentcytoplasm
SC00005840cellular_componentribosome
SC00006412biological_processtranslation
SC00015935cellular_componentsmall ribosomal subunit
SC01990904cellular_componentribonucleoprotein complex
SCC0003735molecular_functionstructural constituent of ribosome
SCC0005840cellular_componentribosome
SCC0006412biological_processtranslation
SD00003723molecular_functionRNA binding
SD00003735molecular_functionstructural constituent of ribosome
SD00005634cellular_componentnucleus
SD00005840cellular_componentribosome
SD00006412biological_processtranslation
SD00016020cellular_componentmembrane
SD00022627cellular_componentcytosolic small ribosomal subunit
SD01990904cellular_componentribonucleoprotein complex
SDD0003735molecular_functionstructural constituent of ribosome
SDD0005840cellular_componentribosome
SDD0006412biological_processtranslation
SDD0008270molecular_functionzinc ion binding
SDD0022627cellular_componentcytosolic small ribosomal subunit
SDD1990904cellular_componentribonucleoprotein complex
SE00003723molecular_functionRNA binding
SE00003735molecular_functionstructural constituent of ribosome
SE00005840cellular_componentribosome
SE00006412biological_processtranslation
SE00019843molecular_functionrRNA binding
SE00022627cellular_componentcytosolic small ribosomal subunit
SE01990904cellular_componentribonucleoprotein complex
SEE0003735molecular_functionstructural constituent of ribosome
SEE0005840cellular_componentribosome
SEE0006412biological_processtranslation
SF00000028biological_processribosomal small subunit assembly
SF00003729molecular_functionmRNA binding
SF00003735molecular_functionstructural constituent of ribosome
SF00005840cellular_componentribosome
SF00006412biological_processtranslation
SF00015935cellular_componentsmall ribosomal subunit
SF00019843molecular_functionrRNA binding
SF00022627cellular_componentcytosolic small ribosomal subunit
SF01990904cellular_componentribonucleoprotein complex
SFF0003735molecular_functionstructural constituent of ribosome
SFF0005634cellular_componentnucleus
SFF0005737cellular_componentcytoplasm
SFF0005840cellular_componentribosome
SFF0006412biological_processtranslation
SFF0016567biological_processprotein ubiquitination
SFF0019941biological_processmodification-dependent protein catabolic process
SFF0031386molecular_functionprotein tag activity
SFF0031625molecular_functionubiquitin protein ligase binding
SFF1990904cellular_componentribonucleoprotein complex
SG00003735molecular_functionstructural constituent of ribosome
SG00005840cellular_componentribosome
SG00006412biological_processtranslation
SG01990904cellular_componentribonucleoprotein complex
SGG0001934biological_processpositive regulation of protein phosphorylation
SGG0005080molecular_functionprotein kinase C binding
SGG0005634cellular_componentnucleus
SGG0005829cellular_componentcytosol
SGG0006417biological_processregulation of translation
SGG0043022molecular_functionribosome binding
SGG0045182molecular_functiontranslation regulator activity
SGG0072344biological_processrescue of stalled ribosome
SH00003735molecular_functionstructural constituent of ribosome
SH00005840cellular_componentribosome
SH00006412biological_processtranslation
SI00000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
SI00003735molecular_functionstructural constituent of ribosome
SI00005840cellular_componentribosome
SI00006412biological_processtranslation
SI00022627cellular_componentcytosolic small ribosomal subunit
SI01990904cellular_componentribonucleoprotein complex
SJ00003723molecular_functionRNA binding
SJ00003735molecular_functionstructural constituent of ribosome
SJ00005840cellular_componentribosome
SJ00006412biological_processtranslation
SJ00015935cellular_componentsmall ribosomal subunit
SJ00019843molecular_functionrRNA binding
SJ00042274biological_processribosomal small subunit biogenesis
SJ01990904cellular_componentribonucleoprotein complex
SK00003723molecular_functionRNA binding
SK00003735molecular_functionstructural constituent of ribosome
SK00005737cellular_componentcytoplasm
SK00005840cellular_componentribosome
SK00022627cellular_componentcytosolic small ribosomal subunit
SL00003735molecular_functionstructural constituent of ribosome
SL00005840cellular_componentribosome
SL00006412biological_processtranslation
SL00022627cellular_componentcytosolic small ribosomal subunit
SL01990904cellular_componentribonucleoprotein complex
SM00003735molecular_functionstructural constituent of ribosome
SM00005840cellular_componentribosome
SM00022627cellular_componentcytosolic small ribosomal subunit
SM01990904cellular_componentribonucleoprotein complex
SN00003735molecular_functionstructural constituent of ribosome
SN00005730cellular_componentnucleolus
SN00005840cellular_componentribosome
SN00006412biological_processtranslation
SN00022627cellular_componentcytosolic small ribosomal subunit
SN00070181molecular_functionsmall ribosomal subunit rRNA binding
SN01990904cellular_componentribonucleoprotein complex
SO00000028biological_processribosomal small subunit assembly
SO00003735molecular_functionstructural constituent of ribosome
SO00005840cellular_componentribosome
SO00006412biological_processtranslation
SO00022627cellular_componentcytosolic small ribosomal subunit
SO01990904cellular_componentribonucleoprotein complex
SP00000028biological_processribosomal small subunit assembly
SP00003735molecular_functionstructural constituent of ribosome
SP00005840cellular_componentribosome
SP00006412biological_processtranslation
SP00015935cellular_componentsmall ribosomal subunit
SP00022627cellular_componentcytosolic small ribosomal subunit
SP01990904cellular_componentribonucleoprotein complex
SQ00000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
SQ00003723molecular_functionRNA binding
SQ00003735molecular_functionstructural constituent of ribosome
SQ00005840cellular_componentribosome
SQ00006412biological_processtranslation
SQ00022627cellular_componentcytosolic small ribosomal subunit
SQ01990904cellular_componentribonucleoprotein complex
SR00003735molecular_functionstructural constituent of ribosome
SR00005840cellular_componentribosome
SR00006412biological_processtranslation
SS00003676molecular_functionnucleic acid binding
SS00003723molecular_functionRNA binding
SS00003735molecular_functionstructural constituent of ribosome
SS00005829cellular_componentcytosol
SS00005840cellular_componentribosome
SS00006412biological_processtranslation
SS00015935cellular_componentsmall ribosomal subunit
SS01990904cellular_componentribonucleoprotein complex
ST00000028biological_processribosomal small subunit assembly
ST00003723molecular_functionRNA binding
ST00003735molecular_functionstructural constituent of ribosome
ST00005840cellular_componentribosome
ST00006412biological_processtranslation
ST00022627cellular_componentcytosolic small ribosomal subunit
ST01990904cellular_componentribonucleoprotein complex
SU00005840cellular_componentribosome
SU01990904cellular_componentribonucleoprotein complex
SV00003735molecular_functionstructural constituent of ribosome
SV00005840cellular_componentribosome
SV00006412biological_processtranslation
SW00003735molecular_functionstructural constituent of ribosome
SW00005840cellular_componentribosome
SW00006412biological_processtranslation
SW00022627cellular_componentcytosolic small ribosomal subunit
SW01990904cellular_componentribonucleoprotein complex
SX00003735molecular_functionstructural constituent of ribosome
SX00005840cellular_componentribosome
SX00006412biological_processtranslation
SX00015935cellular_componentsmall ribosomal subunit
SY00003735molecular_functionstructural constituent of ribosome
SY00005840cellular_componentribosome
SY00006412biological_processtranslation
SY01990904cellular_componentribonucleoprotein complex
SZ00003735molecular_functionstructural constituent of ribosome
SZ00005840cellular_componentribosome
SZ00022627cellular_componentcytosolic small ribosomal subunit
SZ01990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
SX0LYS57-ARG64

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
SFFLYS27-ASP52

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. IkaHLakyTnDksSkyqLiqMqsclyrVarY
ChainResidueDetails
SN0ILE98-TYR128

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvD
ChainResidueDetails
LA0PRO188-ASP199

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FsqqdliDviGvTkGKGkeGttkR
ChainResidueDetails
LB0PHE213-ARG236

site_idPS00475
Number of Residues33
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGgGdLsvkkpIvViarqFTkdAeekInavG
ChainResidueDetails
LAALYS108-GLY140

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. RaCfayngvirkyd.LMICRrCFR
ChainResidueDetails
SDDARG31-ARG53

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLNaPksWsLdK
ChainResidueDetails
SE0HIS8-LYS22

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGsDvqGfPM
ChainResidueDetails
SG0ILE51-MET62

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FkRfqswRvkRVses..WRKprG
ChainResidueDetails
LEEPHE24-GLY44

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. TLelFrLkHinNcVlvknnessrqMLqkIrnFV
ChainResidueDetails
LF0THR97-VAL129

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. IITGsvDgKIMLWNT
ChainResidueDetails
SGGILE119-THR133
SGGVAL166-ILE180

site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSnGkKnkrn.HttCcRCG
ChainResidueDetails
LJJGLY4-GLY23

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDmVkVVsGefKKke.GvV
ChainResidueDetails
LY0GLY52-VAL69

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnKrkkvRTPGN
ChainResidueDetails
LGGTHR15-ASN28

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GEyVdikvnpaihk.GmpHkyYhGrTG
ChainResidueDetails
LT0GLY37-GLY62

site_idPS01172
Number of Residues12
DetailsRIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKviLKieC
ChainResidueDetails
LOOLYS61-CYS72

site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRlAYGKPyGtaARV
ChainResidueDetails
LI0ALA108-VAL129

226707

PDB entries from 2024-10-30

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