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8J3T

Complex structure of human cytomegalovirus protease and a non-covalent small-molecule ligand

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0006508biological_processproteolysis
B0004252molecular_functionserine-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Charge relay system => ECO:0000255|HAMAP-Rule:MF_04008, ECO:0000269|PubMed:8805706
ChainResidueDetails
AHIS63
ASER132
BHIS63
BSER132

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Charge relay system => ECO:0000255|HAMAP-Rule:MF_04008
ChainResidueDetails
AHIS157
BHIS157

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Cleavage; by assemblin; Internal site => ECO:0000269|PubMed:12163586
ChainResidueDetails
AGLN143
BGLN143

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Cleavage; by assemblin; Cryptic site => ECO:0000269|PubMed:12163586
ChainResidueDetails
AALA209
BALA209

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Cleavage; by assemblin; Release site => ECO:0000255|HAMAP-Rule:MF_04008
ChainResidueDetails
AALA256
BALA256

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 238
ChainResidueDetails
AHIS63hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ASER132covalently attached, hydrogen bond acceptor, hydrogen bond donor, nucleofuge, nucleophile, proton acceptor, proton donor
ASER134hydrogen bond donor, increase acidity, increase basicity
AHIS157electrostatic stabiliser, hydrogen bond acceptor, increase acidity, increase basicity
AARG165electrostatic stabiliser, hydrogen bond donor
AARG166electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues6
DetailsM-CSA 238
ChainResidueDetails
BHIS63hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BSER132covalently attached, hydrogen bond acceptor, hydrogen bond donor, nucleofuge, nucleophile, proton acceptor, proton donor
BSER134hydrogen bond donor, increase acidity, increase basicity
BHIS157electrostatic stabiliser, hydrogen bond acceptor, increase acidity, increase basicity
BARG165electrostatic stabiliser, hydrogen bond donor
BARG166electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-10-30

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