8IQF
Cryo-EM structure of the dimeric human CAF1-H3-H4 complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000785 | cellular_component | chromatin |
| A | 0003682 | molecular_function | chromatin binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0006260 | biological_process | DNA replication |
| A | 0006281 | biological_process | DNA repair |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006334 | biological_process | nucleosome assembly |
| A | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| A | 0006974 | biological_process | DNA damage response |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0033186 | cellular_component | CAF-1 complex |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0051082 | molecular_function | unfolded protein binding |
| A | 0070087 | molecular_function | chromo shadow domain binding |
| B | 0000785 | cellular_component | chromatin |
| B | 0003682 | molecular_function | chromatin binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006260 | biological_process | DNA replication |
| B | 0006281 | biological_process | DNA repair |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006334 | biological_process | nucleosome assembly |
| B | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| B | 0006974 | biological_process | DNA damage response |
| B | 0032991 | cellular_component | protein-containing complex |
| B | 0033186 | cellular_component | CAF-1 complex |
| B | 0042393 | molecular_function | histone binding |
| B | 0051082 | molecular_function | unfolded protein binding |
| C | 0000118 | cellular_component | histone deacetylase complex |
| C | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| C | 0000781 | cellular_component | chromosome, telomeric region |
| C | 0000785 | cellular_component | chromatin |
| C | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005654 | cellular_component | nucleoplasm |
| C | 0006260 | biological_process | DNA replication |
| C | 0006281 | biological_process | DNA repair |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006334 | biological_process | nucleosome assembly |
| C | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| C | 0006338 | biological_process | chromatin remodeling |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0006974 | biological_process | DNA damage response |
| C | 0007420 | biological_process | brain development |
| C | 0008094 | molecular_function | ATP-dependent activity, acting on DNA |
| C | 0008285 | biological_process | negative regulation of cell population proliferation |
| C | 0016581 | cellular_component | NuRD complex |
| C | 0016589 | cellular_component | NURF complex |
| C | 0030336 | biological_process | negative regulation of cell migration |
| C | 0030512 | biological_process | negative regulation of transforming growth factor beta receptor signaling pathway |
| C | 0031492 | molecular_function | nucleosomal DNA binding |
| C | 0031507 | biological_process | heterochromatin formation |
| C | 0032991 | cellular_component | protein-containing complex |
| C | 0033186 | cellular_component | CAF-1 complex |
| C | 0035098 | cellular_component | ESC/E(Z) complex |
| C | 0042393 | molecular_function | histone binding |
| C | 0042659 | biological_process | regulation of cell fate specification |
| C | 0042826 | molecular_function | histone deacetylase binding |
| C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| C | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| C | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| C | 0070822 | cellular_component | Sin3-type complex |
| C | 1902455 | biological_process | negative regulation of stem cell population maintenance |
| C | 1902459 | biological_process | positive regulation of stem cell population maintenance |
| C | 2000736 | biological_process | regulation of stem cell differentiation |
| D | 0000786 | cellular_component | nucleosome |
| D | 0003677 | molecular_function | DNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005576 | cellular_component | extracellular region |
| D | 0005634 | cellular_component | nucleus |
| D | 0005654 | cellular_component | nucleoplasm |
| D | 0005694 | cellular_component | chromosome |
| D | 0006325 | biological_process | chromatin organization |
| D | 0006334 | biological_process | nucleosome assembly |
| D | 0016020 | cellular_component | membrane |
| D | 0030527 | molecular_function | structural constituent of chromatin |
| D | 0031492 | molecular_function | nucleosomal DNA binding |
| D | 0031507 | biological_process | heterochromatin formation |
| D | 0032200 | biological_process | telomere organization |
| D | 0032991 | cellular_component | protein-containing complex |
| D | 0040029 | biological_process | epigenetic regulation of gene expression |
| D | 0045296 | molecular_function | cadherin binding |
| D | 0046982 | molecular_function | protein heterodimerization activity |
| D | 0070062 | cellular_component | extracellular exosome |
| E | 0000781 | cellular_component | chromosome, telomeric region |
| E | 0000786 | cellular_component | nucleosome |
| E | 0003677 | molecular_function | DNA binding |
| E | 0003723 | molecular_function | RNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005576 | cellular_component | extracellular region |
| E | 0005634 | cellular_component | nucleus |
| E | 0005654 | cellular_component | nucleoplasm |
| E | 0005694 | cellular_component | chromosome |
| E | 0006325 | biological_process | chromatin organization |
| E | 0006334 | biological_process | nucleosome assembly |
| E | 0016020 | cellular_component | membrane |
| E | 0030527 | molecular_function | structural constituent of chromatin |
| E | 0032200 | biological_process | telomere organization |
| E | 0032991 | cellular_component | protein-containing complex |
| E | 0045653 | biological_process | negative regulation of megakaryocyte differentiation |
| E | 0046982 | molecular_function | protein heterodimerization activity |
| E | 0061644 | biological_process | protein localization to CENP-A containing chromatin |
| E | 0070062 | cellular_component | extracellular exosome |
| F | 0000785 | cellular_component | chromatin |
| F | 0003682 | molecular_function | chromatin binding |
| F | 0005515 | molecular_function | protein binding |
| F | 0005634 | cellular_component | nucleus |
| F | 0005654 | cellular_component | nucleoplasm |
| F | 0006260 | biological_process | DNA replication |
| F | 0006281 | biological_process | DNA repair |
| F | 0006325 | biological_process | chromatin organization |
| F | 0006334 | biological_process | nucleosome assembly |
| F | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| F | 0006974 | biological_process | DNA damage response |
| F | 0032991 | cellular_component | protein-containing complex |
| F | 0033186 | cellular_component | CAF-1 complex |
| F | 0042802 | molecular_function | identical protein binding |
| F | 0051082 | molecular_function | unfolded protein binding |
| F | 0070087 | molecular_function | chromo shadow domain binding |
| G | 0000785 | cellular_component | chromatin |
| G | 0003682 | molecular_function | chromatin binding |
| G | 0005515 | molecular_function | protein binding |
| G | 0005634 | cellular_component | nucleus |
| G | 0005654 | cellular_component | nucleoplasm |
| G | 0005737 | cellular_component | cytoplasm |
| G | 0005829 | cellular_component | cytosol |
| G | 0006260 | biological_process | DNA replication |
| G | 0006281 | biological_process | DNA repair |
| G | 0006325 | biological_process | chromatin organization |
| G | 0006334 | biological_process | nucleosome assembly |
| G | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| G | 0006974 | biological_process | DNA damage response |
| G | 0032991 | cellular_component | protein-containing complex |
| G | 0033186 | cellular_component | CAF-1 complex |
| G | 0042393 | molecular_function | histone binding |
| G | 0051082 | molecular_function | unfolded protein binding |
| H | 0000118 | cellular_component | histone deacetylase complex |
| H | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| H | 0000781 | cellular_component | chromosome, telomeric region |
| H | 0000785 | cellular_component | chromatin |
| H | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| H | 0005515 | molecular_function | protein binding |
| H | 0005634 | cellular_component | nucleus |
| H | 0005654 | cellular_component | nucleoplasm |
| H | 0006260 | biological_process | DNA replication |
| H | 0006281 | biological_process | DNA repair |
| H | 0006325 | biological_process | chromatin organization |
| H | 0006334 | biological_process | nucleosome assembly |
| H | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| H | 0006338 | biological_process | chromatin remodeling |
| H | 0006351 | biological_process | DNA-templated transcription |
| H | 0006355 | biological_process | regulation of DNA-templated transcription |
| H | 0006974 | biological_process | DNA damage response |
| H | 0007420 | biological_process | brain development |
| H | 0008094 | molecular_function | ATP-dependent activity, acting on DNA |
| H | 0008285 | biological_process | negative regulation of cell population proliferation |
| H | 0016581 | cellular_component | NuRD complex |
| H | 0016589 | cellular_component | NURF complex |
| H | 0030336 | biological_process | negative regulation of cell migration |
| H | 0030512 | biological_process | negative regulation of transforming growth factor beta receptor signaling pathway |
| H | 0031492 | molecular_function | nucleosomal DNA binding |
| H | 0031507 | biological_process | heterochromatin formation |
| H | 0032991 | cellular_component | protein-containing complex |
| H | 0033186 | cellular_component | CAF-1 complex |
| H | 0035098 | cellular_component | ESC/E(Z) complex |
| H | 0042393 | molecular_function | histone binding |
| H | 0042659 | biological_process | regulation of cell fate specification |
| H | 0042826 | molecular_function | histone deacetylase binding |
| H | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| H | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| H | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| H | 0070822 | cellular_component | Sin3-type complex |
| H | 1902455 | biological_process | negative regulation of stem cell population maintenance |
| H | 1902459 | biological_process | positive regulation of stem cell population maintenance |
| H | 2000736 | biological_process | regulation of stem cell differentiation |
| I | 0000786 | cellular_component | nucleosome |
| I | 0003677 | molecular_function | DNA binding |
| I | 0005515 | molecular_function | protein binding |
| I | 0005576 | cellular_component | extracellular region |
| I | 0005634 | cellular_component | nucleus |
| I | 0005654 | cellular_component | nucleoplasm |
| I | 0005694 | cellular_component | chromosome |
| I | 0006325 | biological_process | chromatin organization |
| I | 0006334 | biological_process | nucleosome assembly |
| I | 0016020 | cellular_component | membrane |
| I | 0030527 | molecular_function | structural constituent of chromatin |
| I | 0031492 | molecular_function | nucleosomal DNA binding |
| I | 0031507 | biological_process | heterochromatin formation |
| I | 0032200 | biological_process | telomere organization |
| I | 0032991 | cellular_component | protein-containing complex |
| I | 0040029 | biological_process | epigenetic regulation of gene expression |
| I | 0045296 | molecular_function | cadherin binding |
| I | 0046982 | molecular_function | protein heterodimerization activity |
| I | 0070062 | cellular_component | extracellular exosome |
| J | 0000781 | cellular_component | chromosome, telomeric region |
| J | 0000786 | cellular_component | nucleosome |
| J | 0003677 | molecular_function | DNA binding |
| J | 0003723 | molecular_function | RNA binding |
| J | 0005515 | molecular_function | protein binding |
| J | 0005576 | cellular_component | extracellular region |
| J | 0005634 | cellular_component | nucleus |
| J | 0005654 | cellular_component | nucleoplasm |
| J | 0005694 | cellular_component | chromosome |
| J | 0006325 | biological_process | chromatin organization |
| J | 0006334 | biological_process | nucleosome assembly |
| J | 0016020 | cellular_component | membrane |
| J | 0030527 | molecular_function | structural constituent of chromatin |
| J | 0032200 | biological_process | telomere organization |
| J | 0032991 | cellular_component | protein-containing complex |
| J | 0045653 | biological_process | negative regulation of megakaryocyte differentiation |
| J | 0046982 | molecular_function | protein heterodimerization activity |
| J | 0061644 | biological_process | protein localization to CENP-A containing chromatin |
| J | 0070062 | cellular_component | extracellular exosome |
Functional Information from PROSITE/UniProt
| site_id | PS00047 |
| Number of Residues | 5 |
| Details | HISTONE_H4 Histone H4 signature. GAKRH |
| Chain | Residue | Details |
| E | GLY14-HIS18 |
| site_id | PS00322 |
| Number of Residues | 7 |
| Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
| Chain | Residue | Details |
| D | LYS14-LEU20 |
| site_id | PS00678 |
| Number of Residues | 15 |
| Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. MASAsvDnTAIIWDV |
| Chain | Residue | Details |
| B | MET144-VAL158 | |
| C | LEU193-ILE207 | |
| C | LEU289-LEU303 | |
| C | LEU333-LEU347 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| D | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 80 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 72 |
| Details | Region: {"description":"Necessary for homodimerization and competence for chromatin assembly"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 52 |
| Details | Compositional bias: {"description":"Acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Citrulline; alternate","evidences":[{"source":"PubMed","id":"16567635","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine; by HASPIN and VRK1","evidences":[{"source":"PubMed","id":"15681610","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16185088","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31527692","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16457588","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"5-glutamyl serotonin; alternate","evidences":[{"source":"PubMed","id":"30867594","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine; by PKC","evidences":[{"source":"PubMed","id":"20228790","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Symmetric dimethylarginine; by PRMT5; alternate","evidences":[{"source":"UniProtKB","id":"P68433","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"11242053","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16185088","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16457588","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine; alternate; by AURKB, AURKC, RPS6KA3, RPS6KA4 and RPS6KA5","evidences":[{"source":"PubMed","id":"10464286","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11856369","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12560483","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15681610","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16185088","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16457588","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine; by PKC and CHEK1","evidences":[{"source":"PubMed","id":"12560483","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18066052","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18243098","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22901803","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"15983376","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16185088","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16627869","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine","evidences":[{"source":"PubMed","id":"15983376","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"19783980","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 8 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI17 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI18 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI19 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29211711","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI20 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI21 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P84243","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI22 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI23 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"PubMed","id":"31542297","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI24 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27436229","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI25 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"PubMed","id":"17267393","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI26 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"PubMed","id":"21724829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17081983","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"21406692","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI27 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"15592455","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI28 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62806","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI29 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P62806","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI30 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI31 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"PubMed","id":"30886146","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI32 |
| Number of Residues | 4 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"19818714","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI33 |
| Number of Residues | 4 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI34 |
| Number of Residues | 186 |
| Details | Repeat: {"description":"WD 1","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI35 |
| Number of Residues | 98 |
| Details | Repeat: {"description":"WD 2","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI36 |
| Number of Residues | 94 |
| Details | Repeat: {"description":"WD 3","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI37 |
| Number of Residues | 90 |
| Details | Repeat: {"description":"WD 4","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI38 |
| Number of Residues | 86 |
| Details | Repeat: {"description":"WD 5","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI39 |
| Number of Residues | 112 |
| Details | Repeat: {"description":"WD 6","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI40 |
| Number of Residues | 64 |
| Details | Repeat: {"description":"WD 7","evidences":[{"source":"PubMed","id":"39460621","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8TX8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI41 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI42 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q60972","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI43 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI44 |
| Number of Residues | 4 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"25755297","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI45 |
| Number of Residues | 86 |
| Details | Repeat: {"description":"WD 1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI46 |
| Number of Residues | 78 |
| Details | Repeat: {"description":"WD 3"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI47 |
| Number of Residues | 78 |
| Details | Repeat: {"description":"WD 4"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI48 |
| Number of Residues | 102 |
| Details | Repeat: {"description":"WD 5"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI49 |
| Number of Residues | 82 |
| Details | Repeat: {"description":"WD 6"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI50 |
| Number of Residues | 82 |
| Details | Repeat: {"description":"WD 7"} |
| Chain | Residue | Details |






