8GWK
SARS-CoV-2 RNA E-RTC complex with RMP-nsp9 and GMPPNP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0006351 | biological_process | DNA-templated transcription |
A | 0039694 | biological_process | viral RNA genome replication |
B | 0004197 | molecular_function | cysteine-type endopeptidase activity |
B | 0008242 | molecular_function | omega peptidase activity |
B | 0016740 | molecular_function | transferase activity |
C | 0004197 | molecular_function | cysteine-type endopeptidase activity |
C | 0008242 | molecular_function | omega peptidase activity |
C | 0016740 | molecular_function | transferase activity |
D | 0004197 | molecular_function | cysteine-type endopeptidase activity |
D | 0008242 | molecular_function | omega peptidase activity |
D | 0016740 | molecular_function | transferase activity |
E | 0004386 | molecular_function | helicase activity |
E | 0005524 | molecular_function | ATP binding |
E | 0008270 | molecular_function | zinc ion binding |
F | 0004386 | molecular_function | helicase activity |
F | 0005524 | molecular_function | ATP binding |
F | 0008270 | molecular_function | zinc ion binding |
G | 0003723 | molecular_function | RNA binding |
G | 0019079 | biological_process | viral genome replication |
Functional Information from PROSITE/UniProt
site_id | PS00213 |
Number of Residues | 12 |
Details | LIPOCALIN Lipocalin signature. GTS..KFYGGWHNM |
Chain | Residue | Details |
A | GLY590-MET601 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | SITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3 |
Chain | Residue | Details |
G | GLN113 | |
E | CYS55 | |
E | CYS72 | |
E | HIS75 | |
F | CYS5 | |
F | CYS8 | |
F | CYS16 | |
F | CYS19 | |
F | CYS26 | |
F | CYS29 | |
F | HIS33 | |
E | CYS8 | |
F | HIS39 | |
F | CYS50 | |
F | CYS55 | |
F | CYS72 | |
F | HIS75 | |
E | CYS16 | |
E | CYS19 | |
E | CYS26 | |
E | CYS29 | |
E | HIS33 | |
E | HIS39 | |
E | CYS50 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00990 |
Chain | Residue | Details |
E | GLY282 | |
F | GLY282 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3 |
Chain | Residue | Details |
E | GLN601 | |
F | GLN601 | |
A | CYS306 | |
A | CYS310 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01293, ECO:0000269|PubMed:32358203, ECO:0000269|PubMed:32526208, ECO:0000269|PubMed:33232691, ECO:0007744|PDB:7CYQ |
Chain | Residue | Details |
A | CYS487 | |
A | HIS642 | |
A | CYS646 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01293, ECO:0000269|PubMed:32358203, ECO:0000269|PubMed:32526208, ECO:0000269|PubMed:33232691 |
Chain | Residue | Details |
A | CYS645 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | SITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3 |
Chain | Residue | Details |
A | GLN932 |