| Chain | GOid | namespace | contents |
| A | 0000118 | cellular_component | histone deacetylase complex |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0000781 | cellular_component | chromosome, telomeric region |
| A | 0000785 | cellular_component | chromatin |
| A | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005694 | cellular_component | chromosome |
| A | 0005829 | cellular_component | cytosol |
| A | 0006260 | biological_process | DNA replication |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006334 | biological_process | nucleosome assembly |
| A | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| A | 0006338 | biological_process | chromatin remodeling |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0007420 | biological_process | brain development |
| A | 0008094 | molecular_function | ATP-dependent activity, acting on DNA |
| A | 0008285 | biological_process | negative regulation of cell population proliferation |
| A | 0016581 | cellular_component | NuRD complex |
| A | 0016589 | cellular_component | NURF complex |
| A | 0030336 | biological_process | negative regulation of cell migration |
| A | 0030512 | biological_process | negative regulation of transforming growth factor beta receptor signaling pathway |
| A | 0031492 | molecular_function | nucleosomal DNA binding |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0033186 | cellular_component | CAF-1 complex |
| A | 0035098 | cellular_component | ESC/E(Z) complex |
| A | 0042393 | molecular_function | histone binding |
| A | 0042659 | biological_process | regulation of cell fate specification |
| A | 0042826 | molecular_function | histone deacetylase binding |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| A | 0070822 | cellular_component | Sin3-type complex |
| A | 1902455 | biological_process | negative regulation of stem cell population maintenance |
| A | 1902459 | biological_process | positive regulation of stem cell population maintenance |
| A | 1904949 | cellular_component | ATPase complex |
| A | 2000736 | biological_process | regulation of stem cell differentiation |
| B | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| B | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| B | 0001222 | molecular_function | transcription corepressor binding |
| B | 0001739 | cellular_component | sex chromatin |
| B | 0003682 | molecular_function | chromatin binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005677 | cellular_component | chromatin silencing complex |
| B | 0005730 | cellular_component | nucleolus |
| B | 0006325 | biological_process | chromatin organization |
| B | 0008047 | molecular_function | enzyme activator activity |
| B | 0008283 | biological_process | cell population proliferation |
| B | 0008284 | biological_process | positive regulation of cell population proliferation |
| B | 0016586 | cellular_component | RSC-type complex |
| B | 0016604 | cellular_component | nuclear body |
| B | 0031490 | molecular_function | chromatin DNA binding |
| B | 0032993 | cellular_component | protein-DNA complex |
| B | 0035064 | molecular_function | methylated histone binding |
| B | 0035098 | cellular_component | ESC/E(Z) complex |
| B | 0043565 | molecular_function | sequence-specific DNA binding |
| B | 0045596 | biological_process | negative regulation of cell differentiation |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0048709 | biological_process | oligodendrocyte differentiation |
| B | 0060816 | biological_process | random inactivation of X chromosome |
| B | 0106222 | molecular_function | lncRNA binding |
| B | 0140718 | biological_process | facultative heterochromatin formation |
| B | 1990841 | molecular_function | promoter-specific chromatin binding |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| C | 0000785 | cellular_component | chromatin |
| C | 0003677 | molecular_function | DNA binding |
| C | 0003712 | molecular_function | transcription coregulator activity |
| C | 0005634 | cellular_component | nucleus |
| C | 0005654 | cellular_component | nucleoplasm |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| C | 0035098 | cellular_component | ESC/E(Z) complex |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000082 | biological_process | G1/S transition of mitotic cell cycle |
| D | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| D | 0000781 | cellular_component | chromosome, telomeric region |
| D | 0000785 | cellular_component | chromatin |
| D | 0000976 | molecular_function | transcription cis-regulatory region binding |
| D | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| D | 0000979 | molecular_function | RNA polymerase II core promoter sequence-specific DNA binding |
| D | 0001222 | molecular_function | transcription corepressor binding |
| D | 0003677 | molecular_function | DNA binding |
| D | 0003682 | molecular_function | chromatin binding |
| D | 0003714 | molecular_function | transcription corepressor activity |
| D | 0003723 | molecular_function | RNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005654 | cellular_component | nucleoplasm |
| D | 0005677 | cellular_component | chromatin silencing complex |
| D | 0005694 | cellular_component | chromosome |
| D | 0005721 | cellular_component | pericentric heterochromatin |
| D | 0006325 | biological_process | chromatin organization |
| D | 0006346 | biological_process | DNA methylation-dependent heterochromatin formation |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| D | 0008168 | molecular_function | methyltransferase activity |
| D | 0008284 | biological_process | positive regulation of cell population proliferation |
| D | 0009913 | biological_process | epidermal cell differentiation |
| D | 0010468 | biological_process | regulation of gene expression |
| D | 0010629 | biological_process | negative regulation of gene expression |
| D | 0010718 | biological_process | positive regulation of epithelial to mesenchymal transition |
| D | 0014013 | biological_process | regulation of gliogenesis |
| D | 0014834 | biological_process | skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration |
| D | 0014898 | biological_process | cardiac muscle hypertrophy in response to stress |
| D | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
| D | 0021695 | biological_process | cerebellar cortex development |
| D | 0021766 | biological_process | hippocampus development |
| D | 0030097 | biological_process | hemopoiesis |
| D | 0030183 | biological_process | B cell differentiation |
| D | 0030216 | biological_process | keratinocyte differentiation |
| D | 0030335 | biological_process | positive regulation of cell migration |
| D | 0031048 | biological_process | regulatory ncRNA-mediated heterochromatin formation |
| D | 0031490 | molecular_function | chromatin DNA binding |
| D | 0031491 | molecular_function | nucleosome binding |
| D | 0031507 | biological_process | heterochromatin formation |
| D | 0031509 | biological_process | subtelomeric heterochromatin formation |
| D | 0032259 | biological_process | methylation |
| D | 0032355 | biological_process | response to estradiol |
| D | 0034244 | biological_process | negative regulation of transcription elongation by RNA polymerase II |
| D | 0035098 | cellular_component | ESC/E(Z) complex |
| D | 0035984 | biological_process | cellular response to trichostatin A |
| D | 0036211 | biological_process | protein modification process |
| D | 0036333 | biological_process | hepatocyte homeostasis |
| D | 0042054 | molecular_function | histone methyltransferase activity |
| D | 0042127 | biological_process | regulation of cell population proliferation |
| D | 0042393 | molecular_function | histone binding |
| D | 0042752 | biological_process | regulation of circadian rhythm |
| D | 0043021 | molecular_function | ribonucleoprotein complex binding |
| D | 0043406 | biological_process | positive regulation of MAP kinase activity |
| D | 0043547 | biological_process | positive regulation of GTPase activity |
| D | 0043565 | molecular_function | sequence-specific DNA binding |
| D | 0045120 | cellular_component | pronucleus |
| D | 0045202 | cellular_component | synapse |
| D | 0045605 | biological_process | negative regulation of epidermal cell differentiation |
| D | 0045617 | biological_process | negative regulation of keratinocyte differentiation |
| D | 0045814 | biological_process | negative regulation of gene expression, epigenetic |
| D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| D | 0046976 | molecular_function | histone H3K27 methyltransferase activity |
| D | 0048387 | biological_process | negative regulation of retinoic acid receptor signaling pathway |
| D | 0048511 | biological_process | rhythmic process |
| D | 0048863 | biological_process | stem cell differentiation |
| D | 0050767 | biological_process | regulation of neurogenesis |
| D | 0051154 | biological_process | negative regulation of striated muscle cell differentiation |
| D | 0051932 | biological_process | synaptic transmission, GABAergic |
| D | 0070301 | biological_process | cellular response to hydrogen peroxide |
| D | 0070314 | biological_process | G1 to G0 transition |
| D | 0070878 | molecular_function | primary miRNA binding |
| D | 0071168 | biological_process | protein localization to chromatin |
| D | 0071902 | biological_process | positive regulation of protein serine/threonine kinase activity |
| D | 0090183 | biological_process | regulation of kidney development |
| D | 0097421 | biological_process | liver regeneration |
| D | 0106222 | molecular_function | lncRNA binding |
| D | 0140718 | biological_process | facultative heterochromatin formation |
| D | 0140938 | molecular_function | histone H3 methyltransferase activity |
| D | 0140951 | molecular_function | histone H3K27 trimethyltransferase activity |
| D | 1900006 | biological_process | positive regulation of dendrite development |
| D | 1900016 | biological_process | negative regulation of cytokine production involved in inflammatory response |
| D | 1902808 | biological_process | positive regulation of cell cycle G1/S phase transition |
| D | 1904772 | biological_process | response to tetrachloromethane |
| D | 1990841 | molecular_function | promoter-specific chromatin binding |
| D | 2000134 | biological_process | negative regulation of G1/S transition of mitotic cell cycle |
| D | 2000737 | biological_process | negative regulation of stem cell differentiation |
| E | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| E | 0001222 | molecular_function | transcription corepressor binding |
| E | 0003682 | molecular_function | chromatin binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005634 | cellular_component | nucleus |
| E | 0005654 | cellular_component | nucleoplasm |
| E | 0005694 | cellular_component | chromosome |
| E | 0005829 | cellular_component | cytosol |
| E | 0006325 | biological_process | chromatin organization |
| E | 0008047 | molecular_function | enzyme activator activity |
| E | 0021510 | biological_process | spinal cord development |
| E | 0031491 | molecular_function | nucleosome binding |
| E | 0031507 | biological_process | heterochromatin formation |
| E | 0035098 | cellular_component | ESC/E(Z) complex |
| E | 0042802 | molecular_function | identical protein binding |
| E | 0045892 | biological_process | negative regulation of DNA-templated transcription |
