8EFP
CryoEM structure of GSDMB in complex with shigella IpaH7.8
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| B | 0004842 | molecular_function | ubiquitin-protein transferase activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
| B | 0016567 | biological_process | protein ubiquitination |
| B | 0016740 | molecular_function | transferase activity |
| B | 0030430 | cellular_component | host cell cytoplasm |
| B | 0034055 | biological_process | effector-mediated activation of host programmed cell death by symbiont |
| B | 0035821 | biological_process | modulation of process of another organism |
| B | 0052041 | biological_process | symbiont-mediated suppression of host programmed cell death |
| B | 0061630 | molecular_function | ubiquitin protein ligase activity |
| C | 0001786 | molecular_function | phosphatidylserine binding |
| C | 0005546 | molecular_function | phosphatidylinositol-4,5-bisphosphate binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0012501 | biological_process | programmed cell death |
| C | 0031640 | biological_process | killing of cells of another organism |
| C | 0042742 | biological_process | defense response to bacterium |
| C | 0070269 | biological_process | pyroptotic inflammatory response |
| C | 0070273 | molecular_function | phosphatidylinositol-4-phosphate binding |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 21 |
| Details | Repeat: {"description":"LRR 1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 17 |
| Details | Repeat: {"description":"LRR 2"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 21 |
| Details | Repeat: {"description":"LRR 3"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 17 |
| Details | Repeat: {"description":"LRR 4"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 19 |
| Details | Repeat: {"description":"LRR 5"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 21 |
| Details | Repeat: {"description":"LRR 6"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 19 |
| Details | Repeat: {"description":"LRR 7"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 21 |
| Details | Repeat: {"description":"LRR 8"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 23 |
| Details | Repeat: {"description":"LRR 9"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 30 |
| Details | Transmembrane: {"description":"Beta stranded","evidences":[{"source":"PubMed","id":"36991122","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"36991125","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8EFP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8ET1","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8ET2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8GTJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8GTN","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 3 |
| Details | Cross-link: {"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"36991122","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 3 |
| Details | Cross-link: {"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"34022140","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
