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8E91

Cryo-EM structure of substrate-free ClpX.ClpP

Functional Information from GO Data
ChainGOidnamespacecontents
A0002020molecular_functionprotease binding
A0004176molecular_functionATP-dependent peptidase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006457biological_processprotein folding
A0008270molecular_functionzinc ion binding
A0009368cellular_componentendopeptidase Clp complex
A0009376cellular_componentHslUV protease complex
A0016887molecular_functionATP hydrolysis activity
A0030164biological_processprotein denaturation
A0042802molecular_functionidentical protein binding
A0043335biological_processprotein unfolding
A0046872molecular_functionmetal ion binding
A0046983molecular_functionprotein dimerization activity
A0051082molecular_functionunfolded protein binding
A0051301biological_processcell division
A0051603biological_processproteolysis involved in protein catabolic process
A0097718molecular_functiondisordered domain specific binding
A0140662molecular_functionATP-dependent protein folding chaperone
B0002020molecular_functionprotease binding
B0004176molecular_functionATP-dependent peptidase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006457biological_processprotein folding
B0008270molecular_functionzinc ion binding
B0009368cellular_componentendopeptidase Clp complex
B0009376cellular_componentHslUV protease complex
B0016887molecular_functionATP hydrolysis activity
B0030164biological_processprotein denaturation
B0042802molecular_functionidentical protein binding
B0043335biological_processprotein unfolding
B0046872molecular_functionmetal ion binding
B0046983molecular_functionprotein dimerization activity
B0051082molecular_functionunfolded protein binding
B0051301biological_processcell division
B0051603biological_processproteolysis involved in protein catabolic process
B0097718molecular_functiondisordered domain specific binding
B0140662molecular_functionATP-dependent protein folding chaperone
C0002020molecular_functionprotease binding
C0004176molecular_functionATP-dependent peptidase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005829cellular_componentcytosol
C0006457biological_processprotein folding
C0008270molecular_functionzinc ion binding
C0009368cellular_componentendopeptidase Clp complex
C0009376cellular_componentHslUV protease complex
C0016887molecular_functionATP hydrolysis activity
C0030164biological_processprotein denaturation
C0042802molecular_functionidentical protein binding
C0043335biological_processprotein unfolding
C0046872molecular_functionmetal ion binding
C0046983molecular_functionprotein dimerization activity
C0051082molecular_functionunfolded protein binding
C0051301biological_processcell division
C0051603biological_processproteolysis involved in protein catabolic process
C0097718molecular_functiondisordered domain specific binding
C0140662molecular_functionATP-dependent protein folding chaperone
D0002020molecular_functionprotease binding
D0004176molecular_functionATP-dependent peptidase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005829cellular_componentcytosol
D0006457biological_processprotein folding
D0008270molecular_functionzinc ion binding
D0009368cellular_componentendopeptidase Clp complex
D0009376cellular_componentHslUV protease complex
D0016887molecular_functionATP hydrolysis activity
D0030164biological_processprotein denaturation
D0042802molecular_functionidentical protein binding
D0043335biological_processprotein unfolding
D0046872molecular_functionmetal ion binding
D0046983molecular_functionprotein dimerization activity
D0051082molecular_functionunfolded protein binding
D0051301biological_processcell division
D0051603biological_processproteolysis involved in protein catabolic process
D0097718molecular_functiondisordered domain specific binding
D0140662molecular_functionATP-dependent protein folding chaperone
E0002020molecular_functionprotease binding
E0004176molecular_functionATP-dependent peptidase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005829cellular_componentcytosol
E0006457biological_processprotein folding
E0008270molecular_functionzinc ion binding
E0009368cellular_componentendopeptidase Clp complex
E0009376cellular_componentHslUV protease complex
E0016887molecular_functionATP hydrolysis activity
E0030164biological_processprotein denaturation
E0042802molecular_functionidentical protein binding
E0043335biological_processprotein unfolding
E0046872molecular_functionmetal ion binding
E0046983molecular_functionprotein dimerization activity
E0051082molecular_functionunfolded protein binding
E0051301biological_processcell division
E0051603biological_processproteolysis involved in protein catabolic process
E0097718molecular_functiondisordered domain specific binding
E0140662molecular_functionATP-dependent protein folding chaperone
F0002020molecular_functionprotease binding
F0004176molecular_functionATP-dependent peptidase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005829cellular_componentcytosol
F0006457biological_processprotein folding
F0008270molecular_functionzinc ion binding
F0009368cellular_componentendopeptidase Clp complex
F0009376cellular_componentHslUV protease complex
F0016887molecular_functionATP hydrolysis activity
F0030164biological_processprotein denaturation
F0042802molecular_functionidentical protein binding
F0043335biological_processprotein unfolding
F0046872molecular_functionmetal ion binding
F0046983molecular_functionprotein dimerization activity
F0051082molecular_functionunfolded protein binding
F0051301biological_processcell division
F0051603biological_processproteolysis involved in protein catabolic process
F0097718molecular_functiondisordered domain specific binding
F0140662molecular_functionATP-dependent protein folding chaperone
H0004176molecular_functionATP-dependent peptidase activity
H0004252molecular_functionserine-type endopeptidase activity
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006508biological_processproteolysis
H0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
H0008236molecular_functionserine-type peptidase activity
H0009266biological_processresponse to temperature stimulus
H0009314biological_processresponse to radiation
H0009368cellular_componentendopeptidase Clp complex
H0009376cellular_componentHslUV protease complex
H0009408biological_processresponse to heat
H0010498biological_processproteasomal protein catabolic process
H0016020cellular_componentmembrane
H0042802molecular_functionidentical protein binding
H0043068biological_processpositive regulation of programmed cell death
H0051117molecular_functionATPase binding
I0004176molecular_functionATP-dependent peptidase activity
I0004252molecular_functionserine-type endopeptidase activity
I0005515molecular_functionprotein binding
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0006508biological_processproteolysis
I0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
I0008236molecular_functionserine-type peptidase activity
I0009266biological_processresponse to temperature stimulus
I0009314biological_processresponse to radiation
I0009368cellular_componentendopeptidase Clp complex
I0009376cellular_componentHslUV protease complex
I0009408biological_processresponse to heat
I0010498biological_processproteasomal protein catabolic process
I0016020cellular_componentmembrane
I0042802molecular_functionidentical protein binding
I0043068biological_processpositive regulation of programmed cell death
I0051117molecular_functionATPase binding
J0004176molecular_functionATP-dependent peptidase activity
J0004252molecular_functionserine-type endopeptidase activity
J0005515molecular_functionprotein binding
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0006508biological_processproteolysis
J0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
J0008236molecular_functionserine-type peptidase activity
J0009266biological_processresponse to temperature stimulus
J0009314biological_processresponse to radiation
J0009368cellular_componentendopeptidase Clp complex
J0009376cellular_componentHslUV protease complex
J0009408biological_processresponse to heat
J0010498biological_processproteasomal protein catabolic process
J0016020cellular_componentmembrane
J0042802molecular_functionidentical protein binding
J0043068biological_processpositive regulation of programmed cell death
J0051117molecular_functionATPase binding
K0004176molecular_functionATP-dependent peptidase activity
K0004252molecular_functionserine-type endopeptidase activity
K0005515molecular_functionprotein binding
K0005737cellular_componentcytoplasm
K0005829cellular_componentcytosol
K0006508biological_processproteolysis
K0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
K0008236molecular_functionserine-type peptidase activity
K0009266biological_processresponse to temperature stimulus
K0009314biological_processresponse to radiation
K0009368cellular_componentendopeptidase Clp complex
K0009376cellular_componentHslUV protease complex
K0009408biological_processresponse to heat
K0010498biological_processproteasomal protein catabolic process
K0016020cellular_componentmembrane
K0042802molecular_functionidentical protein binding
K0043068biological_processpositive regulation of programmed cell death
K0051117molecular_functionATPase binding
L0004176molecular_functionATP-dependent peptidase activity
L0004252molecular_functionserine-type endopeptidase activity
L0005515molecular_functionprotein binding
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0006508biological_processproteolysis
L0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
L0008236molecular_functionserine-type peptidase activity
L0009266biological_processresponse to temperature stimulus
L0009314biological_processresponse to radiation
L0009368cellular_componentendopeptidase Clp complex
L0009376cellular_componentHslUV protease complex
L0009408biological_processresponse to heat
L0010498biological_processproteasomal protein catabolic process
L0016020cellular_componentmembrane
L0042802molecular_functionidentical protein binding
L0043068biological_processpositive regulation of programmed cell death
L0051117molecular_functionATPase binding
M0004176molecular_functionATP-dependent peptidase activity
M0004252molecular_functionserine-type endopeptidase activity
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0006508biological_processproteolysis
M0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
M0008236molecular_functionserine-type peptidase activity
M0009266biological_processresponse to temperature stimulus
M0009314biological_processresponse to radiation
M0009368cellular_componentendopeptidase Clp complex
M0009376cellular_componentHslUV protease complex
M0009408biological_processresponse to heat
M0010498biological_processproteasomal protein catabolic process
M0016020cellular_componentmembrane
M0042802molecular_functionidentical protein binding
M0043068biological_processpositive regulation of programmed cell death
M0051117molecular_functionATPase binding
N0004176molecular_functionATP-dependent peptidase activity
N0004252molecular_functionserine-type endopeptidase activity
N0005515molecular_functionprotein binding
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0006508biological_processproteolysis
N0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
N0008236molecular_functionserine-type peptidase activity
N0009266biological_processresponse to temperature stimulus
N0009314biological_processresponse to radiation
N0009368cellular_componentendopeptidase Clp complex
N0009376cellular_componentHslUV protease complex
N0009408biological_processresponse to heat
N0010498biological_processproteasomal protein catabolic process
N0016020cellular_componentmembrane
N0042802molecular_functionidentical protein binding
N0043068biological_processpositive regulation of programmed cell death
N0051117molecular_functionATPase binding
h0004176molecular_functionATP-dependent peptidase activity
h0004252molecular_functionserine-type endopeptidase activity
h0005515molecular_functionprotein binding
h0005737cellular_componentcytoplasm
h0005829cellular_componentcytosol
h0006508biological_processproteolysis
h0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
h0008236molecular_functionserine-type peptidase activity
h0009266biological_processresponse to temperature stimulus
h0009314biological_processresponse to radiation
h0009368cellular_componentendopeptidase Clp complex
h0009376cellular_componentHslUV protease complex
h0009408biological_processresponse to heat
h0010498biological_processproteasomal protein catabolic process
h0016020cellular_componentmembrane
h0042802molecular_functionidentical protein binding
h0043068biological_processpositive regulation of programmed cell death
h0051117molecular_functionATPase binding
i0004176molecular_functionATP-dependent peptidase activity
i0004252molecular_functionserine-type endopeptidase activity
i0005515molecular_functionprotein binding
i0005737cellular_componentcytoplasm
i0005829cellular_componentcytosol
i0006508biological_processproteolysis
i0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
i0008236molecular_functionserine-type peptidase activity
i0009266biological_processresponse to temperature stimulus
i0009314biological_processresponse to radiation
i0009368cellular_componentendopeptidase Clp complex
i0009376cellular_componentHslUV protease complex
i0009408biological_processresponse to heat
i0010498biological_processproteasomal protein catabolic process
i0016020cellular_componentmembrane
i0042802molecular_functionidentical protein binding
i0043068biological_processpositive regulation of programmed cell death
i0051117molecular_functionATPase binding
j0004176molecular_functionATP-dependent peptidase activity
j0004252molecular_functionserine-type endopeptidase activity
j0005515molecular_functionprotein binding
j0005737cellular_componentcytoplasm
j0005829cellular_componentcytosol
j0006508biological_processproteolysis
j0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
j0008236molecular_functionserine-type peptidase activity
j0009266biological_processresponse to temperature stimulus
j0009314biological_processresponse to radiation
j0009368cellular_componentendopeptidase Clp complex
j0009376cellular_componentHslUV protease complex
j0009408biological_processresponse to heat
j0010498biological_processproteasomal protein catabolic process
j0016020cellular_componentmembrane
j0042802molecular_functionidentical protein binding
j0043068biological_processpositive regulation of programmed cell death
j0051117molecular_functionATPase binding
k0004176molecular_functionATP-dependent peptidase activity
k0004252molecular_functionserine-type endopeptidase activity
k0005515molecular_functionprotein binding
k0005737cellular_componentcytoplasm
k0005829cellular_componentcytosol
k0006508biological_processproteolysis
k0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
k0008236molecular_functionserine-type peptidase activity
k0009266biological_processresponse to temperature stimulus
k0009314biological_processresponse to radiation
k0009368cellular_componentendopeptidase Clp complex
k0009376cellular_componentHslUV protease complex
k0009408biological_processresponse to heat
k0010498biological_processproteasomal protein catabolic process
k0016020cellular_componentmembrane
k0042802molecular_functionidentical protein binding
k0043068biological_processpositive regulation of programmed cell death
k0051117molecular_functionATPase binding
l0004176molecular_functionATP-dependent peptidase activity
l0004252molecular_functionserine-type endopeptidase activity
l0005515molecular_functionprotein binding
l0005737cellular_componentcytoplasm
l0005829cellular_componentcytosol
l0006508biological_processproteolysis
l0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
l0008236molecular_functionserine-type peptidase activity
l0009266biological_processresponse to temperature stimulus
l0009314biological_processresponse to radiation
l0009368cellular_componentendopeptidase Clp complex
l0009376cellular_componentHslUV protease complex
l0009408biological_processresponse to heat
l0010498biological_processproteasomal protein catabolic process
l0016020cellular_componentmembrane
l0042802molecular_functionidentical protein binding
l0043068biological_processpositive regulation of programmed cell death
l0051117molecular_functionATPase binding
m0004176molecular_functionATP-dependent peptidase activity
m0004252molecular_functionserine-type endopeptidase activity
m0005515molecular_functionprotein binding
m0005737cellular_componentcytoplasm
m0005829cellular_componentcytosol
m0006508biological_processproteolysis
m0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
m0008236molecular_functionserine-type peptidase activity
m0009266biological_processresponse to temperature stimulus
m0009314biological_processresponse to radiation
m0009368cellular_componentendopeptidase Clp complex
m0009376cellular_componentHslUV protease complex
m0009408biological_processresponse to heat
m0010498biological_processproteasomal protein catabolic process
m0016020cellular_componentmembrane
m0042802molecular_functionidentical protein binding
m0043068biological_processpositive regulation of programmed cell death
m0051117molecular_functionATPase binding
n0004176molecular_functionATP-dependent peptidase activity
n0004252molecular_functionserine-type endopeptidase activity
n0005515molecular_functionprotein binding
n0005737cellular_componentcytoplasm
n0005829cellular_componentcytosol
n0006508biological_processproteolysis
n0006515biological_processprotein quality control for misfolded or incompletely synthesized proteins
n0008236molecular_functionserine-type peptidase activity
n0009266biological_processresponse to temperature stimulus
n0009314biological_processresponse to radiation
n0009368cellular_componentendopeptidase Clp complex
n0009376cellular_componentHslUV protease complex
n0009408biological_processresponse to heat
n0010498biological_processproteasomal protein catabolic process
n0016020cellular_componentmembrane
n0042802molecular_functionidentical protein binding
n0043068biological_processpositive regulation of programmed cell death
n0051117molecular_functionATPase binding
Functional Information from PROSITE/UniProt
site_idPS00381
Number of Residues12
DetailsCLP_PROTEASE_SER Endopeptidase Clp serine active site. TicMGqAASMGA
ChainResidueDetails
HTHR89-ALA100

site_idPS00382
Number of Residues14
DetailsCLP_PROTEASE_HIS Endopeptidase Clp histidine active site. RfclPnsrVMIHQP
ChainResidueDetails
HARG111-PRO124

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01250, ECO:0000269|PubMed:14525985
ChainResidueDetails
BCYS15
BCYS18
DCYS37
DCYS40
ECYS15
ECYS18
ECYS37
ECYS40
FCYS15
FCYS18
FCYS37
FCYS40
ACYS15
CCYS18
CCYS37
CCYS40
DCYS15
DCYS18
ACYS18
ACYS37
ACYS40
BCYS37
BCYS40
CCYS15

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00175, ECO:0000269|PubMed:19914167, ECO:0000269|PubMed:23622246
ChainResidueDetails
LASP171
MHIS122
MASP171
NHIS122
NASP171
hHIS122
hASP171
iHIS122
iASP171
jHIS122
jASP171
kHIS122
kASP171
lHIS122
lASP171
mHIS122
mASP171
nHIS122
nASP171
EPRO120
KHIS122
KASP171
LHIS122
APRO120
BPRO120
CPRO120
DPRO120
FPRO120

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
HGLY68electrostatic stabiliser
HSER97covalent catalysis, proton shuttle (general acid/base)
HMET98electrostatic stabiliser
HHIS122proton shuttle (general acid/base)
HASP171electrostatic stabiliser, modifies pKa

site_idMCSA2
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
IGLY68electrostatic stabiliser
ISER97covalent catalysis, proton shuttle (general acid/base)
IMET98electrostatic stabiliser
IHIS122proton shuttle (general acid/base)
IASP171electrostatic stabiliser, modifies pKa

site_idMCSA3
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
JGLY68electrostatic stabiliser
JSER97covalent catalysis, proton shuttle (general acid/base)
JMET98electrostatic stabiliser
JHIS122proton shuttle (general acid/base)
JASP171electrostatic stabiliser, modifies pKa

site_idMCSA4
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
KGLY68electrostatic stabiliser
KSER97covalent catalysis, proton shuttle (general acid/base)
KMET98electrostatic stabiliser
KHIS122proton shuttle (general acid/base)
KASP171electrostatic stabiliser, modifies pKa

site_idMCSA5
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
LGLY68electrostatic stabiliser
LSER97covalent catalysis, proton shuttle (general acid/base)
LMET98electrostatic stabiliser
LHIS122proton shuttle (general acid/base)
LASP171electrostatic stabiliser, modifies pKa

site_idMCSA6
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
MGLY68electrostatic stabiliser
MSER97covalent catalysis, proton shuttle (general acid/base)
MMET98electrostatic stabiliser
MHIS122proton shuttle (general acid/base)
MASP171electrostatic stabiliser, modifies pKa

site_idMCSA7
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
NGLY68electrostatic stabiliser
NSER97covalent catalysis, proton shuttle (general acid/base)
NMET98electrostatic stabiliser
NHIS122proton shuttle (general acid/base)
NASP171electrostatic stabiliser, modifies pKa

site_idMCSA8
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
hGLY68electrostatic stabiliser
hSER97covalent catalysis, proton shuttle (general acid/base)
hMET98electrostatic stabiliser
hHIS122proton shuttle (general acid/base)
hASP171electrostatic stabiliser, modifies pKa

site_idMCSA9
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
iGLY68electrostatic stabiliser
iSER97covalent catalysis, proton shuttle (general acid/base)
iMET98electrostatic stabiliser
iHIS122proton shuttle (general acid/base)
iASP171electrostatic stabiliser, modifies pKa

site_idMCSA10
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
jGLY68electrostatic stabiliser
jSER97covalent catalysis, proton shuttle (general acid/base)
jMET98electrostatic stabiliser
jHIS122proton shuttle (general acid/base)
jASP171electrostatic stabiliser, modifies pKa

site_idMCSA11
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
kGLY68electrostatic stabiliser
kSER97covalent catalysis, proton shuttle (general acid/base)
kMET98electrostatic stabiliser
kHIS122proton shuttle (general acid/base)
kASP171electrostatic stabiliser, modifies pKa

site_idMCSA12
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
lGLY68electrostatic stabiliser
lSER97covalent catalysis, proton shuttle (general acid/base)
lMET98electrostatic stabiliser
lHIS122proton shuttle (general acid/base)
lASP171electrostatic stabiliser, modifies pKa

site_idMCSA13
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
mGLY68electrostatic stabiliser
mSER97covalent catalysis, proton shuttle (general acid/base)
mMET98electrostatic stabiliser
mHIS122proton shuttle (general acid/base)
mASP171electrostatic stabiliser, modifies pKa

site_idMCSA14
Number of Residues5
DetailsM-CSA 912
ChainResidueDetails
nGLY68electrostatic stabiliser
nSER97covalent catalysis, proton shuttle (general acid/base)
nMET98electrostatic stabiliser
nHIS122proton shuttle (general acid/base)
nASP171electrostatic stabiliser, modifies pKa

221051

PDB entries from 2024-06-12

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