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8DUL

Cryo-EM Structure of Antibody SKT05 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0019028cellular_componentviral capsid
A0055036cellular_componentvirion membrane
B0005198molecular_functionstructural molecule activity
B0019028cellular_componentviral capsid
F0004252molecular_functionserine-type endopeptidase activity
F0019028cellular_componentviral capsid
F0055036cellular_componentvirion membrane
G0005198molecular_functionstructural molecule activity
G0019028cellular_componentviral capsid
J0004252molecular_functionserine-type endopeptidase activity
J0019028cellular_componentviral capsid
J0055036cellular_componentvirion membrane
K0005198molecular_functionstructural molecule activity
K0019028cellular_componentviral capsid
Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YVCNVNH
ChainResidueDetails
HTYR194-HIS200
LTYR192-HIS198

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1257
DetailsTOPO_DOM: Extracellular => ECO:0000255
ChainResidueDetails
AGLU-54-PRO-30
AILE13-ASN408
JGLU-54-PRO-30
JILE13-ASN408
FGLU-54-PRO-30
FILE13-ASN408

site_idSWS_FT_FI2
Number of Residues180
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
ALEU-29-ALA-9
AGLY-8-GLY12
ATRP409-VAL429
JLEU-29-ALA-9
JGLY-8-GLY12
JTRP409-VAL429
FLEU-29-ALA-9
FGLY-8-GLY12
FTRP409-VAL429

site_idSWS_FT_FI3
Number of Residues6
DetailsSITE: Cleavage; by host signal peptidase => ECO:0000250
ChainResidueDetails
AALA-55
AALA0
JALA-55
JALA0
FALA-55
FALA0

site_idSWS_FT_FI4
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255
ChainResidueDetails
AASN139
AASN245
JASN139
JASN245
FASN139
FASN245

221371

PDB entries from 2024-06-19

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