8C29

Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce (Picea abies) at 2.8 Angstrom resolution

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009507	cellular_component	chloroplast
A	0009523	cellular_component	photosystem II
A	0009535	cellular_component	chloroplast thylakoid membrane
A	0009579	cellular_component	thylakoid
A	0009635	biological_process	response to herbicide
A	0009772	biological_process	photosynthetic electron transport in photosystem II
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0016491	molecular_function	oxidoreductase activity
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0019684	biological_process	photosynthesis, light reaction
A	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
A	0046872	molecular_function	metal ion binding
B	0009507	cellular_component	chloroplast
B	0009521	cellular_component	photosystem
B	0009523	cellular_component	photosystem II
B	0009535	cellular_component	chloroplast thylakoid membrane
B	0009579	cellular_component	thylakoid
B	0009767	biological_process	photosynthetic electron transport chain
B	0009772	biological_process	photosynthetic electron transport in photosystem II
B	0015979	biological_process	photosynthesis
B	0016020	cellular_component	membrane
B	0016168	molecular_function	chlorophyll binding
B	0019684	biological_process	photosynthesis, light reaction
B	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
C	0005737	cellular_component	cytoplasm
C	0009507	cellular_component	chloroplast
C	0009521	cellular_component	photosystem
C	0009523	cellular_component	photosystem II
C	0009535	cellular_component	chloroplast thylakoid membrane
C	0009579	cellular_component	thylakoid
C	0009767	biological_process	photosynthetic electron transport chain
C	0009772	biological_process	photosynthetic electron transport in photosystem II
C	0015979	biological_process	photosynthesis
C	0016020	cellular_component	membrane
C	0016168	molecular_function	chlorophyll binding
C	0019684	biological_process	photosynthesis, light reaction
C	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
C	0046872	molecular_function	metal ion binding
D	0005506	molecular_function	iron ion binding
D	0009055	molecular_function	electron transfer activity
D	0009507	cellular_component	chloroplast
D	0009523	cellular_component	photosystem II
D	0009535	cellular_component	chloroplast thylakoid membrane
D	0009579	cellular_component	thylakoid
D	0009772	biological_process	photosynthetic electron transport in photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0015979	biological_process	photosynthesis
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0016491	molecular_function	oxidoreductase activity
D	0019684	biological_process	photosynthesis, light reaction
D	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
D	0046872	molecular_function	metal ion binding
E	0005506	molecular_function	iron ion binding
E	0009055	molecular_function	electron transfer activity
E	0009507	cellular_component	chloroplast
E	0009523	cellular_component	photosystem II
E	0009535	cellular_component	chloroplast thylakoid membrane
E	0009536	cellular_component	plastid
E	0009539	cellular_component	photosystem II reaction center
E	0009579	cellular_component	thylakoid
E	0009767	biological_process	photosynthetic electron transport chain
E	0015979	biological_process	photosynthesis
E	0016020	cellular_component	membrane
E	0019684	biological_process	photosynthesis, light reaction
E	0020037	molecular_function	heme binding
E	0046872	molecular_function	metal ion binding
F	0005506	molecular_function	iron ion binding
F	0009055	molecular_function	electron transfer activity
F	0009507	cellular_component	chloroplast
F	0009523	cellular_component	photosystem II
F	0009535	cellular_component	chloroplast thylakoid membrane
F	0009536	cellular_component	plastid
F	0009539	cellular_component	photosystem II reaction center
F	0009579	cellular_component	thylakoid
F	0009767	biological_process	photosynthetic electron transport chain
F	0015979	biological_process	photosynthesis
F	0016020	cellular_component	membrane
F	0019684	biological_process	photosynthesis, light reaction
F	0020037	molecular_function	heme binding
F	0046872	molecular_function	metal ion binding
G	0009507	cellular_component	chloroplast
G	0009522	cellular_component	photosystem I
G	0009523	cellular_component	photosystem II
G	0009535	cellular_component	chloroplast thylakoid membrane
G	0009579	cellular_component	thylakoid
G	0009765	biological_process	photosynthesis, light harvesting
G	0015979	biological_process	photosynthesis
G	0016020	cellular_component	membrane
G	0016168	molecular_function	chlorophyll binding
H	0009507	cellular_component	chloroplast
H	0009523	cellular_component	photosystem II
H	0009535	cellular_component	chloroplast thylakoid membrane
H	0009579	cellular_component	thylakoid
H	0015979	biological_process	photosynthesis
H	0016020	cellular_component	membrane
H	0042301	molecular_function	phosphate ion binding
H	0050821	biological_process	protein stabilization
I	0005737	cellular_component	cytoplasm
I	0009507	cellular_component	chloroplast
I	0009523	cellular_component	photosystem II
I	0009535	cellular_component	chloroplast thylakoid membrane
I	0009539	cellular_component	photosystem II reaction center
I	0009579	cellular_component	thylakoid
I	0015979	biological_process	photosynthesis
I	0016020	cellular_component	membrane
K	0005737	cellular_component	cytoplasm
K	0009507	cellular_component	chloroplast
K	0009523	cellular_component	photosystem II
K	0009535	cellular_component	chloroplast thylakoid membrane
K	0009539	cellular_component	photosystem II reaction center
K	0009579	cellular_component	thylakoid
K	0015979	biological_process	photosynthesis
K	0016020	cellular_component	membrane
L	0005737	cellular_component	cytoplasm
L	0009507	cellular_component	chloroplast
L	0009523	cellular_component	photosystem II
L	0009535	cellular_component	chloroplast thylakoid membrane
L	0009539	cellular_component	photosystem II reaction center
L	0009579	cellular_component	thylakoid
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
M	0005737	cellular_component	cytoplasm
M	0009507	cellular_component	chloroplast
M	0009523	cellular_component	photosystem II
M	0009535	cellular_component	chloroplast thylakoid membrane
M	0009579	cellular_component	thylakoid
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0019684	biological_process	photosynthesis, light reaction
N	0009507	cellular_component	chloroplast
N	0009522	cellular_component	photosystem I
N	0009523	cellular_component	photosystem II
N	0009535	cellular_component	chloroplast thylakoid membrane
N	0009579	cellular_component	thylakoid
N	0009765	biological_process	photosynthesis, light harvesting
N	0015979	biological_process	photosynthesis
N	0016020	cellular_component	membrane
N	0016168	molecular_function	chlorophyll binding
O	0009523	cellular_component	photosystem II
O	0009579	cellular_component	thylakoid
O	0009654	cellular_component	photosystem II oxygen evolving complex
O	0010207	biological_process	photosystem II assembly
O	0010242	molecular_function	oxygen evolving activity
O	0015979	biological_process	photosynthesis
O	0016020	cellular_component	membrane
O	0042549	biological_process	photosystem II stabilization
R	0009765	biological_process	photosynthesis, light harvesting
R	0016020	cellular_component	membrane
S	0009507	cellular_component	chloroplast
S	0009522	cellular_component	photosystem I
S	0009523	cellular_component	photosystem II
S	0009535	cellular_component	chloroplast thylakoid membrane
S	0009579	cellular_component	thylakoid
S	0009765	biological_process	photosynthesis, light harvesting
S	0015979	biological_process	photosynthesis
S	0016020	cellular_component	membrane
S	0016168	molecular_function	chlorophyll binding
T	0005737	cellular_component	cytoplasm
T	0009507	cellular_component	chloroplast
T	0009523	cellular_component	photosystem II
T	0009535	cellular_component	chloroplast thylakoid membrane
T	0009539	cellular_component	photosystem II reaction center
T	0009579	cellular_component	thylakoid
T	0015979	biological_process	photosynthesis
T	0016020	cellular_component	membrane
V	0009507	cellular_component	chloroplast
V	0009523	cellular_component	photosystem II
V	0009535	cellular_component	chloroplast thylakoid membrane
V	0009579	cellular_component	thylakoid
V	0015979	biological_process	photosynthesis
V	0016020	cellular_component	membrane
W	0009507	cellular_component	chloroplast
W	0009523	cellular_component	photosystem II
W	0009535	cellular_component	chloroplast thylakoid membrane
W	0009579	cellular_component	thylakoid
W	0015979	biological_process	photosynthesis
W	0016020	cellular_component	membrane
W	0042549	biological_process	photosystem II stabilization
X	0009523	cellular_component	photosystem II
X	0015979	biological_process	photosynthesis
X	0016020	cellular_component	membrane
Y	0009507	cellular_component	chloroplast
Y	0009522	cellular_component	photosystem I
Y	0009523	cellular_component	photosystem II
Y	0009535	cellular_component	chloroplast thylakoid membrane
Y	0009579	cellular_component	thylakoid
Y	0009765	biological_process	photosynthesis, light harvesting
Y	0015979	biological_process	photosynthesis
Y	0016020	cellular_component	membrane
Y	0016168	molecular_function	chlorophyll binding
Z	0009523	cellular_component	photosystem II
Z	0009539	cellular_component	photosystem II reaction center
Z	0015979	biological_process	photosynthesis
Z	0042549	biological_process	photosystem II stabilization
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009507	cellular_component	chloroplast
a	0009523	cellular_component	photosystem II
a	0009535	cellular_component	chloroplast thylakoid membrane
a	0009579	cellular_component	thylakoid
a	0009635	biological_process	response to herbicide
a	0009772	biological_process	photosynthetic electron transport in photosystem II
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016020	cellular_component	membrane
a	0016168	molecular_function	chlorophyll binding
a	0016491	molecular_function	oxidoreductase activity
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0019684	biological_process	photosynthesis, light reaction
a	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
a	0046872	molecular_function	metal ion binding
b	0009507	cellular_component	chloroplast
b	0009521	cellular_component	photosystem
b	0009523	cellular_component	photosystem II
b	0009535	cellular_component	chloroplast thylakoid membrane
b	0009579	cellular_component	thylakoid
b	0009767	biological_process	photosynthetic electron transport chain
b	0009772	biological_process	photosynthetic electron transport in photosystem II
b	0015979	biological_process	photosynthesis
b	0016020	cellular_component	membrane
b	0016168	molecular_function	chlorophyll binding
b	0019684	biological_process	photosynthesis, light reaction
b	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
c	0005737	cellular_component	cytoplasm
c	0009507	cellular_component	chloroplast
c	0009521	cellular_component	photosystem
c	0009523	cellular_component	photosystem II
c	0009535	cellular_component	chloroplast thylakoid membrane
c	0009579	cellular_component	thylakoid
c	0009767	biological_process	photosynthetic electron transport chain
c	0009772	biological_process	photosynthetic electron transport in photosystem II
c	0015979	biological_process	photosynthesis
c	0016020	cellular_component	membrane
c	0016168	molecular_function	chlorophyll binding
c	0019684	biological_process	photosynthesis, light reaction
c	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
c	0046872	molecular_function	metal ion binding
d	0005506	molecular_function	iron ion binding
d	0009055	molecular_function	electron transfer activity
d	0009507	cellular_component	chloroplast
d	0009523	cellular_component	photosystem II
d	0009535	cellular_component	chloroplast thylakoid membrane
d	0009579	cellular_component	thylakoid
d	0009772	biological_process	photosynthetic electron transport in photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0015979	biological_process	photosynthesis
d	0016020	cellular_component	membrane
d	0016168	molecular_function	chlorophyll binding
d	0016491	molecular_function	oxidoreductase activity
d	0019684	biological_process	photosynthesis, light reaction
d	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
d	0046872	molecular_function	metal ion binding
e	0005506	molecular_function	iron ion binding
e	0009055	molecular_function	electron transfer activity
e	0009507	cellular_component	chloroplast
e	0009523	cellular_component	photosystem II
e	0009535	cellular_component	chloroplast thylakoid membrane
e	0009536	cellular_component	plastid
e	0009539	cellular_component	photosystem II reaction center
e	0009579	cellular_component	thylakoid
e	0009767	biological_process	photosynthetic electron transport chain
e	0015979	biological_process	photosynthesis
e	0016020	cellular_component	membrane
e	0019684	biological_process	photosynthesis, light reaction
e	0020037	molecular_function	heme binding
e	0046872	molecular_function	metal ion binding
f	0005506	molecular_function	iron ion binding
f	0009055	molecular_function	electron transfer activity
f	0009507	cellular_component	chloroplast
f	0009523	cellular_component	photosystem II
f	0009535	cellular_component	chloroplast thylakoid membrane
f	0009536	cellular_component	plastid
f	0009539	cellular_component	photosystem II reaction center
f	0009579	cellular_component	thylakoid
f	0009767	biological_process	photosynthetic electron transport chain
f	0015979	biological_process	photosynthesis
f	0016020	cellular_component	membrane
f	0019684	biological_process	photosynthesis, light reaction
f	0020037	molecular_function	heme binding
f	0046872	molecular_function	metal ion binding
g	0009507	cellular_component	chloroplast
g	0009522	cellular_component	photosystem I
g	0009523	cellular_component	photosystem II
g	0009535	cellular_component	chloroplast thylakoid membrane
g	0009579	cellular_component	thylakoid
g	0009765	biological_process	photosynthesis, light harvesting
g	0015979	biological_process	photosynthesis
g	0016020	cellular_component	membrane
g	0016168	molecular_function	chlorophyll binding
h	0009507	cellular_component	chloroplast
h	0009523	cellular_component	photosystem II
h	0009535	cellular_component	chloroplast thylakoid membrane
h	0009579	cellular_component	thylakoid
h	0015979	biological_process	photosynthesis
h	0016020	cellular_component	membrane
h	0042301	molecular_function	phosphate ion binding
h	0050821	biological_process	protein stabilization
i	0005737	cellular_component	cytoplasm
i	0009507	cellular_component	chloroplast
i	0009523	cellular_component	photosystem II
i	0009535	cellular_component	chloroplast thylakoid membrane
i	0009539	cellular_component	photosystem II reaction center
i	0009579	cellular_component	thylakoid
i	0015979	biological_process	photosynthesis
i	0016020	cellular_component	membrane
k	0005737	cellular_component	cytoplasm
k	0009507	cellular_component	chloroplast
k	0009523	cellular_component	photosystem II
k	0009535	cellular_component	chloroplast thylakoid membrane
k	0009539	cellular_component	photosystem II reaction center
k	0009579	cellular_component	thylakoid
k	0015979	biological_process	photosynthesis
k	0016020	cellular_component	membrane
l	0005737	cellular_component	cytoplasm
l	0009507	cellular_component	chloroplast
l	0009523	cellular_component	photosystem II
l	0009535	cellular_component	chloroplast thylakoid membrane
l	0009539	cellular_component	photosystem II reaction center
l	0009579	cellular_component	thylakoid
l	0015979	biological_process	photosynthesis
l	0016020	cellular_component	membrane
m	0005737	cellular_component	cytoplasm
m	0009507	cellular_component	chloroplast
m	0009523	cellular_component	photosystem II
m	0009535	cellular_component	chloroplast thylakoid membrane
m	0009579	cellular_component	thylakoid
m	0015979	biological_process	photosynthesis
m	0016020	cellular_component	membrane
m	0019684	biological_process	photosynthesis, light reaction
n	0009507	cellular_component	chloroplast
n	0009522	cellular_component	photosystem I
n	0009523	cellular_component	photosystem II
n	0009535	cellular_component	chloroplast thylakoid membrane
n	0009579	cellular_component	thylakoid
n	0009765	biological_process	photosynthesis, light harvesting
n	0015979	biological_process	photosynthesis
n	0016020	cellular_component	membrane
n	0016168	molecular_function	chlorophyll binding
o	0009523	cellular_component	photosystem II
o	0009579	cellular_component	thylakoid
o	0009654	cellular_component	photosystem II oxygen evolving complex
o	0010207	biological_process	photosystem II assembly
o	0010242	molecular_function	oxygen evolving activity
o	0015979	biological_process	photosynthesis
o	0016020	cellular_component	membrane
o	0042549	biological_process	photosystem II stabilization
r	0009765	biological_process	photosynthesis, light harvesting
r	0016020	cellular_component	membrane
s	0009507	cellular_component	chloroplast
s	0009522	cellular_component	photosystem I
s	0009523	cellular_component	photosystem II
s	0009535	cellular_component	chloroplast thylakoid membrane
s	0009579	cellular_component	thylakoid
s	0009765	biological_process	photosynthesis, light harvesting
s	0015979	biological_process	photosynthesis
s	0016020	cellular_component	membrane
s	0016168	molecular_function	chlorophyll binding
t	0005737	cellular_component	cytoplasm
t	0009507	cellular_component	chloroplast
t	0009523	cellular_component	photosystem II
t	0009535	cellular_component	chloroplast thylakoid membrane
t	0009539	cellular_component	photosystem II reaction center
t	0009579	cellular_component	thylakoid
t	0015979	biological_process	photosynthesis
t	0016020	cellular_component	membrane
v	0009507	cellular_component	chloroplast
v	0009523	cellular_component	photosystem II
v	0009535	cellular_component	chloroplast thylakoid membrane
v	0009579	cellular_component	thylakoid
v	0015979	biological_process	photosynthesis
v	0016020	cellular_component	membrane
w	0009507	cellular_component	chloroplast
w	0009523	cellular_component	photosystem II
w	0009535	cellular_component	chloroplast thylakoid membrane
w	0009579	cellular_component	thylakoid
w	0015979	biological_process	photosynthesis
w	0016020	cellular_component	membrane
w	0042549	biological_process	photosystem II stabilization
x	0009523	cellular_component	photosystem II
x	0015979	biological_process	photosynthesis
x	0016020	cellular_component	membrane
y	0009507	cellular_component	chloroplast
y	0009522	cellular_component	photosystem I
y	0009523	cellular_component	photosystem II
y	0009535	cellular_component	chloroplast thylakoid membrane
y	0009579	cellular_component	thylakoid
y	0009765	biological_process	photosynthesis, light harvesting
y	0015979	biological_process	photosynthesis
y	0016020	cellular_component	membrane
y	0016168	molecular_function	chlorophyll binding
z	0009523	cellular_component	photosystem II
z	0009539	cellular_component	photosystem II reaction center
z	0015979	biological_process	photosynthesis
z	0042549	biological_process	photosystem II stabilization

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlgaallcAiHGA

Chain	Residue	Details
d	ASN191-ALA217
A	ASN191-SER217

---

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. ItSIRYwvIHSITIP

Chain	Residue	Details
e	ILE14-PRO28
f	ILE9-PRO23

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	162
Details	TRANSMEM: Helical => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	TYR29-SER46
a	PHE274-LEU288
A	HIS118-LEU133
A	TRP142-ALA156
A	PHE197-LEU218
A	PHE274-LEU288
a	TYR29-SER46
a	HIS118-LEU133
a	TRP142-ALA156
a	PHE197-LEU218

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	HIS118
A	HIS198
a	HIS118
a	HIS198

---

site_id	SWS_FT_FI3
Number of Residues	20
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	TYR126
A	ALA344
a	TYR126
a	ASP170
a	GLU189
a	HIS215
a	SER264
a	HIS272
a	HIS332
a	GLU333
a	ASP342
A	ASP170
a	ALA344
A	GLU189
A	HIS215
A	SER264
A	HIS272
A	HIS332
A	GLU333
A	ASP342

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	SITE: Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	TYR161
a	TYR161

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	SITE: Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	HIS190
a	HIS190

---

site_id	SWS_FT_FI6
Number of Residues	2
Details	SITE: Cleavage; by CTPA => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	ALA344
a	ALA344

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	MOD_RES: Phosphothreonine => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	THR2
a	THR2

---