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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7Z0O

Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000500cellular_componentRNA polymerase I upstream activating factor complex
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0006325biological_processchromatin organization
A0006355biological_processregulation of DNA-templated transcription
A0006878biological_processintracellular copper ion homeostasis
A0008823molecular_functioncupric reductase (NADH) activity
A0009060biological_processaerobic respiration
A0009303biological_processrRNA transcription
A0030527molecular_functionstructural constituent of chromatin
A0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
A0043505cellular_componentCENP-A containing nucleosome
A0043935biological_processsexual sporulation resulting in formation of a cellular spore
A0045943biological_processpositive regulation of transcription by RNA polymerase I
A0046982molecular_functionprotein heterodimerization activity
A0070911biological_processglobal genome nucleotide-excision repair
B0000500cellular_componentRNA polymerase I upstream activating factor complex
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006325biological_processchromatin organization
B0006334biological_processnucleosome assembly
B0006355biological_processregulation of DNA-templated transcription
B0030527molecular_functionstructural constituent of chromatin
B0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
B0042802molecular_functionidentical protein binding
B0045943biological_processpositive regulation of transcription by RNA polymerase I
B0046982molecular_functionprotein heterodimerization activity
C0000500cellular_componentRNA polymerase I upstream activating factor complex
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0006325biological_processchromatin organization
C0006355biological_processregulation of DNA-templated transcription
C0006878biological_processintracellular copper ion homeostasis
C0008823molecular_functioncupric reductase (NADH) activity
C0009060biological_processaerobic respiration
C0009303biological_processrRNA transcription
C0030527molecular_functionstructural constituent of chromatin
C0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
C0043505cellular_componentCENP-A containing nucleosome
C0043935biological_processsexual sporulation resulting in formation of a cellular spore
C0045943biological_processpositive regulation of transcription by RNA polymerase I
C0046982molecular_functionprotein heterodimerization activity
C0070911biological_processglobal genome nucleotide-excision repair
D0000182molecular_functionrDNA binding
D0000500cellular_componentRNA polymerase I upstream activating factor complex
D0001181molecular_functionRNA polymerase I general transcription initiation factor activity
D0005634cellular_componentnucleus
D0005730cellular_componentnucleolus
D0006325biological_processchromatin organization
D0006361biological_processtranscription initiation at RNA polymerase I promoter
D0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
D0045943biological_processpositive regulation of transcription by RNA polymerase I
E0000500cellular_componentRNA polymerase I upstream activating factor complex
E0001181molecular_functionRNA polymerase I general transcription initiation factor activity
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005730cellular_componentnucleolus
E0017025molecular_functionTBP-class protein binding
E0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
E0045943biological_processpositive regulation of transcription by RNA polymerase I
F0000500cellular_componentRNA polymerase I upstream activating factor complex
F0001165molecular_functionRNA polymerase I cis-regulatory region sequence-specific DNA binding
F0001181molecular_functionRNA polymerase I general transcription initiation factor activity
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005730cellular_componentnucleolus
F0006360biological_processtranscription by RNA polymerase I
F0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
F0045943biological_processpositive regulation of transcription by RNA polymerase I
G0000500cellular_componentRNA polymerase I upstream activating factor complex
G0001165molecular_functionRNA polymerase I cis-regulatory region sequence-specific DNA binding
G0001181molecular_functionRNA polymerase I general transcription initiation factor activity
G0005634cellular_componentnucleus
G0005730cellular_componentnucleolus
G0006325biological_processchromatin organization
G0006361biological_processtranscription initiation at RNA polymerase I promoter
G0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
G0045943biological_processpositive regulation of transcription by RNA polymerase I
H0000126cellular_componenttranscription factor TFIIIB complex
H0000979molecular_functionRNA polymerase II core promoter sequence-specific DNA binding
H0001016molecular_functionRNA polymerase III transcription regulatory region sequence-specific DNA binding
H0001092molecular_functionTFIIA-class transcription factor complex binding
H0001179molecular_functionRNA polymerase I general transcription initiation factor binding
H0001188biological_processRNA polymerase I preinitiation complex assembly
H0003677molecular_functionDNA binding
H0003682molecular_functionchromatin binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005654cellular_componentnucleoplasm
H0005667cellular_componenttranscription regulator complex
H0005669cellular_componenttranscription factor TFIID complex
H0005672cellular_componenttranscription factor TFIIA complex
H0006352biological_processDNA-templated transcription initiation
H0006359biological_processregulation of transcription by RNA polymerase III
H0006367biological_processtranscription initiation at RNA polymerase II promoter
H0008301molecular_functionDNA binding, bending
H0016251molecular_functionRNA polymerase II general transcription initiation factor activity
H0032991cellular_componentprotein-containing complex
H0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
H0045892biological_processnegative regulation of DNA-templated transcription
H0045944biological_processpositive regulation of transcription by RNA polymerase II
H0051123biological_processRNA polymerase II preinitiation complex assembly
H0061629molecular_functionRNA polymerase II-specific DNA-binding transcription factor binding
H0070898biological_processRNA polymerase III preinitiation complex assembly
H0097718molecular_functiondisordered domain specific binding
H0140297molecular_functionDNA-binding transcription factor binding
Functional Information from PROSITE/UniProt
site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY15-HIS19
site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS15-LEU21
site_idPS00351
Number of Residues50
DetailsTFIID Transcription factor TFIID repeat signature. YnPkrFaaVImRirePKttaLIFaSGKMvvtGAKseddsklAsrkyariI
ChainResidueDetails
HTYR94-ILE143
HTYR185-LEU234
site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO67-ILE75
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"PubMed","id":"19113941","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"19113941","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"PubMed","id":"19113941","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17287358","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"16768447","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues1
DetailsModified residue: {"description":"N6-glutaryllysine","evidences":[{"source":"PubMed","id":"31542297","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues76
DetailsRepeat: {"description":"1"}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues77
DetailsRepeat: {"description":"2"}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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