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7YXA

XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608

Functional Information from GO Data
ChainGOidnamespacecontents
A0004930molecular_functionG protein-coupled receptor activity
A0005506molecular_functioniron ion binding
A0007186biological_processG protein-coupled receptor signaling pathway
A0009055molecular_functionelectron transfer activity
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0022900biological_processelectron transport chain
A0038036molecular_functionsphingosine-1-phosphate receptor activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0004930molecular_functionG protein-coupled receptor activity
B0005506molecular_functioniron ion binding
B0007186biological_processG protein-coupled receptor signaling pathway
B0009055molecular_functionelectron transfer activity
B0016020cellular_componentmembrane
B0020037molecular_functionheme binding
B0022900biological_processelectron transport chain
B0038036molecular_functionsphingosine-1-phosphate receptor activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
Functional Information from PROSITE/UniProt
site_idPS00237
Number of Residues17
DetailsG_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. ASVlSLLAIALERSLtM
ChainResidueDetails
AALA121-MET137

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues180
DetailsTOPO_DOM: Extracellular => ECO:0000250
ChainResidueDetails
AMET1-ALA40
AASN92-ARG111
ATRP173-ALA192
AASP274-GLN287
BMET1-ALA40
BASN92-ARG111
BTRP173-ALA192
BASP274-GLN287

site_idSWS_FT_FI2
Number of Residues40
DetailsTRANSMEM: Helical; Name=1 => ECO:0000250
ChainResidueDetails
AVAL41-LEU61
BVAL41-LEU61

site_idSWS_FT_FI3
Number of Residues52
DetailsTOPO_DOM: Cytoplasmic => ECO:0000250
ChainResidueDetails
AGLY62-PRO70
AARG133-THR151
BGLY62-PRO70
BARG133-THR151

site_idSWS_FT_FI4
Number of Residues40
DetailsTRANSMEM: Helical; Name=2 => ECO:0000250
ChainResidueDetails
AMET71-ALA91
BMET71-ALA91

site_idSWS_FT_FI5
Number of Residues40
DetailsTRANSMEM: Helical; Name=3 => ECO:0000250
ChainResidueDetails
AGLU112-GLU132
BGLU112-GLU132

site_idSWS_FT_FI6
Number of Residues40
DetailsTRANSMEM: Helical; Name=4 => ECO:0000250
ChainResidueDetails
ALEU152-GLY172
BLEU152-GLY172

site_idSWS_FT_FI7
Number of Residues40
DetailsTRANSMEM: Helical; Name=5 => ECO:0000250
ChainResidueDetails
ATYR193-ALA213
BTYR193-ALA213

site_idSWS_FT_FI8
Number of Residues40
DetailsTRANSMEM: Helical; Name=6 => ECO:0000250
ChainResidueDetails
ALEU253-LEU273
BLEU253-LEU273

site_idSWS_FT_FI9
Number of Residues40
DetailsTRANSMEM: Helical; Name=7 => ECO:0000250
ChainResidueDetails
AALA288-LEU308
BALA288-LEU308

site_idSWS_FT_FI10
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN20
BASN20

site_idSWS_FT_FI11
Number of Residues4
DetailsBINDING: axial binding residue
ChainResidueDetails
ATRP1007
AILE1102
BTRP1007
BILE1102

222415

PDB entries from 2024-07-10

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