7VPG

Crystal structure of the C-terminal tail of SARS-CoV-1 Orf6 complex with human nucleoporin pair Rae1-Nup98

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000922	cellular_component	spindle pole
A	0000972	biological_process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
A	0001650	cellular_component	fibrillar center
A	0003723	molecular_function	RNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005635	cellular_component	nuclear envelope
A	0005643	cellular_component	nuclear pore
A	0005654	cellular_component	nucleoplasm
A	0005737	cellular_component	cytoplasm
A	0006405	biological_process	RNA export from nucleus
A	0006406	biological_process	mRNA export from nucleus
A	0006913	biological_process	nucleocytoplasmic transport
A	0008017	molecular_function	microtubule binding
A	0043130	molecular_function	ubiquitin binding
A	0051301	biological_process	cell division
A	0060236	biological_process	regulation of mitotic spindle organization
A	0097431	cellular_component	mitotic spindle pole
B	0005643	cellular_component	nuclear pore
C	0000922	cellular_component	spindle pole
C	0000972	biological_process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
C	0001650	cellular_component	fibrillar center
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005635	cellular_component	nuclear envelope
C	0005643	cellular_component	nuclear pore
C	0005654	cellular_component	nucleoplasm
C	0005737	cellular_component	cytoplasm
C	0006405	biological_process	RNA export from nucleus
C	0006406	biological_process	mRNA export from nucleus
C	0006913	biological_process	nucleocytoplasmic transport
C	0008017	molecular_function	microtubule binding
C	0043130	molecular_function	ubiquitin binding
C	0051301	biological_process	cell division
C	0060236	biological_process	regulation of mitotic spindle organization
C	0097431	cellular_component	mitotic spindle pole
D	0005643	cellular_component	nuclear pore
E	0000922	cellular_component	spindle pole
E	0000972	biological_process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
E	0001650	cellular_component	fibrillar center
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005635	cellular_component	nuclear envelope
E	0005643	cellular_component	nuclear pore
E	0005654	cellular_component	nucleoplasm
E	0005737	cellular_component	cytoplasm
E	0006405	biological_process	RNA export from nucleus
E	0006406	biological_process	mRNA export from nucleus
E	0006913	biological_process	nucleocytoplasmic transport
E	0008017	molecular_function	microtubule binding
E	0043130	molecular_function	ubiquitin binding
E	0051301	biological_process	cell division
E	0060236	biological_process	regulation of mitotic spindle organization
E	0097431	cellular_component	mitotic spindle pole
F	0005643	cellular_component	nuclear pore
G	0000922	cellular_component	spindle pole
G	0000972	biological_process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
G	0001650	cellular_component	fibrillar center
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005635	cellular_component	nuclear envelope
G	0005643	cellular_component	nuclear pore
G	0005654	cellular_component	nucleoplasm
G	0005737	cellular_component	cytoplasm
G	0006405	biological_process	RNA export from nucleus
G	0006406	biological_process	mRNA export from nucleus
G	0006913	biological_process	nucleocytoplasmic transport
G	0008017	molecular_function	microtubule binding
G	0043130	molecular_function	ubiquitin binding
G	0051301	biological_process	cell division
G	0060236	biological_process	regulation of mitotic spindle organization
G	0097431	cellular_component	mitotic spindle pole
H	0005643	cellular_component	nuclear pore
I	0044165	cellular_component	host cell endoplasmic reticulum
J	0044165	cellular_component	host cell endoplasmic reticulum
K	0044165	cellular_component	host cell endoplasmic reticulum
X	0044165	cellular_component	host cell endoplasmic reticulum

Functional Information from PROSITE/UniProt

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. VFTAscDkTAKMWDL

Chain	Residue	Details
A	VAL101-LEU115
A	VAL144-THR158

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	168
Details	Repeat: {"description":"WD 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	120
Details	Repeat: {"description":"WD 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	128
Details	Repeat: {"description":"WD 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	152
Details	Repeat: {"description":"WD 4","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	160
Details	Repeat: {"description":"WD 5","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	120
Details	Repeat: {"description":"WD 6","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	144
Details	Repeat: {"description":"WD 7","evidences":[{"source":"PROSITE-ProRule","id":"PRU00221","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20498086","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	4
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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