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7V5N

Crystal structure of Fab fragment of bevacizumab bound to DNA aptamer

Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue EDO A 301
ChainResidue
AGLN37
ALYS45
APRO59
AARG61
APHE62
AGLU81
AASP82
AHOH432

site_idAC2
Number of Residues5
Detailsbinding site for residue EDO A 302
ChainResidue
ASER9
ASER10
ETHR206
EHOH433
APRO8

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 303
ChainResidue
ATYR32
ASER92
ATHR93
DDC24
EASP28
ESER30

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 304
ChainResidue
ASER60
AARG61
ASER76
AHOH441

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 305
ChainResidue
AGLN38
APRO40
AALA84
ATHR85
AHOH408

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 306
ChainResidue
AVAL163
ATHR164
AGLU165
AHOH401
AHOH462

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 A 307
ChainResidue
AASN137
AASN138
BGLY172
BHIS174
BHOH405

site_idAC8
Number of Residues3
Detailsbinding site for residue IMD A 308
ChainResidue
ATYR91
BSER106
BTRP108

site_idAC9
Number of Residues8
Detailsbinding site for residue EDO B 301
ChainResidue
ATHR178
AHOH406
BLEU151
BVAL179
BSER187
BLEU188
BSER189
BHOH418

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO B 302
ChainResidue
BGLU158
BPRO159
BVAL160
BALA178

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO B 303
ChainResidue
BTHR53
BTYR54
BTHR74
BHOH443

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 B 304
ChainResidue
BARG66
BARG67
BARG87
BHOH401

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO D 101
ChainResidue
DDT21
DDC22
DHOH219
DHOH233

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO E 301
ChainResidue
EGLN37
ELYS39
ELYS45
EGLU81
EASP82
ESO4307

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO E 302
ChainResidue
ETYR49
EHOH409
EHOH451
FPRO100
FTYR102
FTYR109

site_idAD7
Number of Residues6
Detailsbinding site for residue EDO E 303
ChainResidue
ETHR197
EHIS198
ELEU201
ESER202
ESER203
EPRO204

site_idAD8
Number of Residues8
Detailsbinding site for residue EDO E 304
ChainResidue
EASN34
EGLN89
ETYR91
ETRP96
FTYR99
FTRP108
FTYR109
FPHE110

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO E 305
ChainResidue
EGLN38
ELYS39
EPRO40
EPHE83
EALA84
ETHR85

site_idAE1
Number of Residues6
Detailsbinding site for residue SO4 E 306
ChainResidue
BLYS139
EPRO8
ESER9
ESER10
ALYS207
BSER138

site_idAE2
Number of Residues6
Detailsbinding site for residue SO4 E 307
ChainResidue
ELYS39
ELYS42
ELYS45
EEDO301
EHOH445
FARG66

site_idAE3
Number of Residues8
Detailsbinding site for residue EDO F 301
ChainResidue
AGLY66
ASER67
FGLY104
FSER105
FHOH448
GDG14
GDT15
GDA17

site_idAE4
Number of Residues8
Detailsbinding site for residue EDO F 302
ChainResidue
ETHR178
EHOH427
FLEU151
FVAL179
FSER187
FSER189
FHOH429
FHOH458

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO F 303
ChainResidue
FGLU158
FPRO159
FVAL160
FALA178
FLEU188
FHOH454

site_idAE6
Number of Residues4
Detailsbinding site for residue EDO F 304
ChainResidue
FARG19
FSER71
FLEU72
FTYR80

site_idAE7
Number of Residues4
Detailsbinding site for residue IMD F 305
ChainResidue
ETYR32
ETYR91
FSER106
FTRP108

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH
ChainResidueDetails
ATYR192-HIS198
BTYR204-HIS210

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PDB entries from 2024-07-24

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