7UMS

Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
A	0019031	cellular_component	viral envelope
A	0019064	biological_process	fusion of virus membrane with host plasma membrane
A	0039626	cellular_component	viral intermediate capsid
A	0044650	biological_process	adhesion of symbiont to host cell
A	0046789	molecular_function	host cell surface receptor binding
A	0046872	molecular_function	metal ion binding
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
B	0019031	cellular_component	viral envelope
B	0019064	biological_process	fusion of virus membrane with host plasma membrane
B	0039626	cellular_component	viral intermediate capsid
B	0044650	biological_process	adhesion of symbiont to host cell
B	0046789	molecular_function	host cell surface receptor binding
B	0046872	molecular_function	metal ion binding
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
C	0019031	cellular_component	viral envelope
C	0019064	biological_process	fusion of virus membrane with host plasma membrane
C	0039626	cellular_component	viral intermediate capsid
C	0044650	biological_process	adhesion of symbiont to host cell
C	0046789	molecular_function	host cell surface receptor binding
C	0046872	molecular_function	metal ion binding
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0019031	cellular_component	viral envelope
D	0019064	biological_process	fusion of virus membrane with host plasma membrane
D	0039626	cellular_component	viral intermediate capsid
D	0044650	biological_process	adhesion of symbiont to host cell
D	0046789	molecular_function	host cell surface receptor binding
D	0046872	molecular_function	metal ion binding
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0019031	cellular_component	viral envelope
E	0019064	biological_process	fusion of virus membrane with host plasma membrane
E	0039626	cellular_component	viral intermediate capsid
E	0044650	biological_process	adhesion of symbiont to host cell
E	0046789	molecular_function	host cell surface receptor binding
E	0046872	molecular_function	metal ion binding
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0019031	cellular_component	viral envelope
F	0019064	biological_process	fusion of virus membrane with host plasma membrane
F	0039626	cellular_component	viral intermediate capsid
F	0044650	biological_process	adhesion of symbiont to host cell
F	0046789	molecular_function	host cell surface receptor binding
F	0046872	molecular_function	metal ion binding
G	0005198	molecular_function	structural molecule activity
G	0019028	cellular_component	viral capsid
G	0019031	cellular_component	viral envelope
G	0019064	biological_process	fusion of virus membrane with host plasma membrane
G	0039626	cellular_component	viral intermediate capsid
G	0044650	biological_process	adhesion of symbiont to host cell
G	0046789	molecular_function	host cell surface receptor binding
G	0046872	molecular_function	metal ion binding
H	0005198	molecular_function	structural molecule activity
H	0019028	cellular_component	viral capsid
H	0019031	cellular_component	viral envelope
H	0019064	biological_process	fusion of virus membrane with host plasma membrane
H	0039626	cellular_component	viral intermediate capsid
H	0044650	biological_process	adhesion of symbiont to host cell
H	0046789	molecular_function	host cell surface receptor binding
H	0046872	molecular_function	metal ion binding
I	0005198	molecular_function	structural molecule activity
I	0019028	cellular_component	viral capsid
I	0019031	cellular_component	viral envelope
I	0019064	biological_process	fusion of virus membrane with host plasma membrane
I	0039626	cellular_component	viral intermediate capsid
I	0044650	biological_process	adhesion of symbiont to host cell
I	0046789	molecular_function	host cell surface receptor binding
I	0046872	molecular_function	metal ion binding
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
J	0019031	cellular_component	viral envelope
J	0019064	biological_process	fusion of virus membrane with host plasma membrane
J	0039626	cellular_component	viral intermediate capsid
J	0044650	biological_process	adhesion of symbiont to host cell
J	0046789	molecular_function	host cell surface receptor binding
J	0046872	molecular_function	metal ion binding
K	0005198	molecular_function	structural molecule activity
K	0019028	cellular_component	viral capsid
K	0019031	cellular_component	viral envelope
K	0019064	biological_process	fusion of virus membrane with host plasma membrane
K	0039626	cellular_component	viral intermediate capsid
K	0044650	biological_process	adhesion of symbiont to host cell
K	0046789	molecular_function	host cell surface receptor binding
K	0046872	molecular_function	metal ion binding
L	0005198	molecular_function	structural molecule activity
L	0019028	cellular_component	viral capsid
L	0019031	cellular_component	viral envelope
L	0019064	biological_process	fusion of virus membrane with host plasma membrane
L	0039626	cellular_component	viral intermediate capsid
L	0044650	biological_process	adhesion of symbiont to host cell
L	0046789	molecular_function	host cell surface receptor binding
L	0046872	molecular_function	metal ion binding
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
M	0019031	cellular_component	viral envelope
M	0019064	biological_process	fusion of virus membrane with host plasma membrane
M	0039626	cellular_component	viral intermediate capsid
M	0044650	biological_process	adhesion of symbiont to host cell
M	0046789	molecular_function	host cell surface receptor binding
M	0046872	molecular_function	metal ion binding
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
N	0019031	cellular_component	viral envelope
N	0019064	biological_process	fusion of virus membrane with host plasma membrane
N	0039626	cellular_component	viral intermediate capsid
N	0044650	biological_process	adhesion of symbiont to host cell
N	0046789	molecular_function	host cell surface receptor binding
N	0046872	molecular_function	metal ion binding
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
O	0019031	cellular_component	viral envelope
O	0019064	biological_process	fusion of virus membrane with host plasma membrane
O	0039626	cellular_component	viral intermediate capsid
O	0044650	biological_process	adhesion of symbiont to host cell
O	0046789	molecular_function	host cell surface receptor binding
O	0046872	molecular_function	metal ion binding
P	0005198	molecular_function	structural molecule activity
P	0019028	cellular_component	viral capsid
P	0019031	cellular_component	viral envelope
P	0019064	biological_process	fusion of virus membrane with host plasma membrane
P	0039626	cellular_component	viral intermediate capsid
P	0044650	biological_process	adhesion of symbiont to host cell
P	0046789	molecular_function	host cell surface receptor binding
P	0046872	molecular_function	metal ion binding
Q	0005198	molecular_function	structural molecule activity
Q	0019028	cellular_component	viral capsid
Q	0019031	cellular_component	viral envelope
Q	0019064	biological_process	fusion of virus membrane with host plasma membrane
Q	0039626	cellular_component	viral intermediate capsid
Q	0044650	biological_process	adhesion of symbiont to host cell
Q	0046789	molecular_function	host cell surface receptor binding
Q	0046872	molecular_function	metal ion binding
R	0005198	molecular_function	structural molecule activity
R	0019028	cellular_component	viral capsid
R	0019031	cellular_component	viral envelope
R	0019064	biological_process	fusion of virus membrane with host plasma membrane
R	0039626	cellular_component	viral intermediate capsid
R	0044650	biological_process	adhesion of symbiont to host cell
R	0046789	molecular_function	host cell surface receptor binding
R	0046872	molecular_function	metal ion binding
T	0019028	cellular_component	viral capsid
T	0019058	biological_process	viral life cycle
U	0019028	cellular_component	viral capsid
U	0019058	biological_process	viral life cycle
V	0019028	cellular_component	viral capsid
V	0019058	biological_process	viral life cycle
a	0016020	cellular_component	membrane
a	0019028	cellular_component	viral capsid
a	0039621	cellular_component	T=13 icosahedral viral capsid
a	0039624	cellular_component	viral outer capsid
a	0044165	cellular_component	host cell endoplasmic reticulum
a	0044166	cellular_component	host cell endoplasmic reticulum lumen
a	0046872	molecular_function	metal ion binding
b	0016020	cellular_component	membrane
b	0019028	cellular_component	viral capsid
b	0039621	cellular_component	T=13 icosahedral viral capsid
b	0039624	cellular_component	viral outer capsid
b	0044165	cellular_component	host cell endoplasmic reticulum
b	0044166	cellular_component	host cell endoplasmic reticulum lumen
b	0046872	molecular_function	metal ion binding
c	0016020	cellular_component	membrane
c	0019028	cellular_component	viral capsid
c	0039621	cellular_component	T=13 icosahedral viral capsid
c	0039624	cellular_component	viral outer capsid
c	0044165	cellular_component	host cell endoplasmic reticulum
c	0044166	cellular_component	host cell endoplasmic reticulum lumen
c	0046872	molecular_function	metal ion binding
d	0016020	cellular_component	membrane
d	0019028	cellular_component	viral capsid
d	0039621	cellular_component	T=13 icosahedral viral capsid
d	0039624	cellular_component	viral outer capsid
d	0044165	cellular_component	host cell endoplasmic reticulum
d	0044166	cellular_component	host cell endoplasmic reticulum lumen
d	0046872	molecular_function	metal ion binding
e	0016020	cellular_component	membrane
e	0019028	cellular_component	viral capsid
e	0039621	cellular_component	T=13 icosahedral viral capsid
e	0039624	cellular_component	viral outer capsid
e	0044165	cellular_component	host cell endoplasmic reticulum
e	0044166	cellular_component	host cell endoplasmic reticulum lumen
e	0046872	molecular_function	metal ion binding
f	0016020	cellular_component	membrane
f	0019028	cellular_component	viral capsid
f	0039621	cellular_component	T=13 icosahedral viral capsid
f	0039624	cellular_component	viral outer capsid
f	0044165	cellular_component	host cell endoplasmic reticulum
f	0044166	cellular_component	host cell endoplasmic reticulum lumen
f	0046872	molecular_function	metal ion binding
g	0016020	cellular_component	membrane
g	0019028	cellular_component	viral capsid
g	0039621	cellular_component	T=13 icosahedral viral capsid
g	0039624	cellular_component	viral outer capsid
g	0044165	cellular_component	host cell endoplasmic reticulum
g	0044166	cellular_component	host cell endoplasmic reticulum lumen
g	0046872	molecular_function	metal ion binding
h	0016020	cellular_component	membrane
h	0019028	cellular_component	viral capsid
h	0039621	cellular_component	T=13 icosahedral viral capsid
h	0039624	cellular_component	viral outer capsid
h	0044165	cellular_component	host cell endoplasmic reticulum
h	0044166	cellular_component	host cell endoplasmic reticulum lumen
h	0046872	molecular_function	metal ion binding
i	0016020	cellular_component	membrane
i	0019028	cellular_component	viral capsid
i	0039621	cellular_component	T=13 icosahedral viral capsid
i	0039624	cellular_component	viral outer capsid
i	0044165	cellular_component	host cell endoplasmic reticulum
i	0044166	cellular_component	host cell endoplasmic reticulum lumen
i	0046872	molecular_function	metal ion binding
j	0016020	cellular_component	membrane
j	0019028	cellular_component	viral capsid
j	0039621	cellular_component	T=13 icosahedral viral capsid
j	0039624	cellular_component	viral outer capsid
j	0044165	cellular_component	host cell endoplasmic reticulum
j	0044166	cellular_component	host cell endoplasmic reticulum lumen
j	0046872	molecular_function	metal ion binding
k	0016020	cellular_component	membrane
k	0019028	cellular_component	viral capsid
k	0039621	cellular_component	T=13 icosahedral viral capsid
k	0039624	cellular_component	viral outer capsid
k	0044165	cellular_component	host cell endoplasmic reticulum
k	0044166	cellular_component	host cell endoplasmic reticulum lumen
k	0046872	molecular_function	metal ion binding
l	0016020	cellular_component	membrane
l	0019028	cellular_component	viral capsid
l	0039621	cellular_component	T=13 icosahedral viral capsid
l	0039624	cellular_component	viral outer capsid
l	0044165	cellular_component	host cell endoplasmic reticulum
l	0044166	cellular_component	host cell endoplasmic reticulum lumen
l	0046872	molecular_function	metal ion binding
m	0016020	cellular_component	membrane
m	0019028	cellular_component	viral capsid
m	0039621	cellular_component	T=13 icosahedral viral capsid
m	0039624	cellular_component	viral outer capsid
m	0044165	cellular_component	host cell endoplasmic reticulum
m	0044166	cellular_component	host cell endoplasmic reticulum lumen
m	0046872	molecular_function	metal ion binding
n	0016020	cellular_component	membrane
n	0019028	cellular_component	viral capsid
n	0039621	cellular_component	T=13 icosahedral viral capsid
n	0039624	cellular_component	viral outer capsid
n	0044165	cellular_component	host cell endoplasmic reticulum
n	0044166	cellular_component	host cell endoplasmic reticulum lumen
n	0046872	molecular_function	metal ion binding
o	0016020	cellular_component	membrane
o	0019028	cellular_component	viral capsid
o	0039621	cellular_component	T=13 icosahedral viral capsid
o	0039624	cellular_component	viral outer capsid
o	0044165	cellular_component	host cell endoplasmic reticulum
o	0044166	cellular_component	host cell endoplasmic reticulum lumen
o	0046872	molecular_function	metal ion binding
p	0016020	cellular_component	membrane
p	0019028	cellular_component	viral capsid
p	0039621	cellular_component	T=13 icosahedral viral capsid
p	0039624	cellular_component	viral outer capsid
p	0044165	cellular_component	host cell endoplasmic reticulum
p	0044166	cellular_component	host cell endoplasmic reticulum lumen
p	0046872	molecular_function	metal ion binding
q	0016020	cellular_component	membrane
q	0019028	cellular_component	viral capsid
q	0039621	cellular_component	T=13 icosahedral viral capsid
q	0039624	cellular_component	viral outer capsid
q	0044165	cellular_component	host cell endoplasmic reticulum
q	0044166	cellular_component	host cell endoplasmic reticulum lumen
q	0046872	molecular_function	metal ion binding
r	0016020	cellular_component	membrane
r	0019028	cellular_component	viral capsid
r	0039621	cellular_component	T=13 icosahedral viral capsid
r	0039624	cellular_component	viral outer capsid
r	0044165	cellular_component	host cell endoplasmic reticulum
r	0044166	cellular_component	host cell endoplasmic reticulum lumen
r	0046872	molecular_function	metal ion binding

Functional Information from PROSITE/UniProt

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH

Chain	Residue	Details
4	TYR207-HIS213
5	TYR197-HIS203

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