7UIO

Mediator-PIC Early (Composite Model)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Aa	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Aa	0003674	molecular_function	molecular_function
Aa	0003712	molecular_function	transcription coregulator activity
Aa	0005515	molecular_function	protein binding
Aa	0005634	cellular_component	nucleus
Aa	0006351	biological_process	DNA-templated transcription
Aa	0006357	biological_process	regulation of transcription by RNA polymerase II
Aa	0016592	cellular_component	mediator complex
Aa	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Aa	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Aa	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Aa	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Aa	0070847	cellular_component	core mediator complex
AA	0003677	molecular_function	DNA binding
AA	0003899	molecular_function	DNA-directed RNA polymerase activity
AA	0006351	biological_process	DNA-templated transcription
Ab	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ab	0003713	molecular_function	transcription coactivator activity
Ab	0005515	molecular_function	protein binding
Ab	0005634	cellular_component	nucleus
Ab	0005829	cellular_component	cytosol
Ab	0006351	biological_process	DNA-templated transcription
Ab	0016592	cellular_component	mediator complex
Ab	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ab	0034976	biological_process	response to endoplasmic reticulum stress
Ab	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ab	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ab	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ab	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Ab	0070847	cellular_component	core mediator complex
AB	0000428	cellular_component	DNA-directed RNA polymerase complex
AB	0001172	biological_process	RNA-templated transcription
AB	0003676	molecular_function	nucleic acid binding
AB	0003677	molecular_function	DNA binding
AB	0003729	molecular_function	mRNA binding
AB	0003899	molecular_function	DNA-directed RNA polymerase activity
AB	0003968	molecular_function	RNA-directed RNA polymerase activity
AB	0005515	molecular_function	protein binding
AB	0005634	cellular_component	nucleus
AB	0005665	cellular_component	RNA polymerase II, core complex
AB	0005739	cellular_component	mitochondrion
AB	0006351	biological_process	DNA-templated transcription
AB	0006354	biological_process	DNA-templated transcription elongation
AB	0006366	biological_process	transcription by RNA polymerase II
AB	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AB	0006368	biological_process	transcription elongation by RNA polymerase II
AB	0008270	molecular_function	zinc ion binding
AB	0010494	cellular_component	cytoplasmic stress granule
AB	0016740	molecular_function	transferase activity
AB	0016779	molecular_function	nucleotidyltransferase activity
AB	0032549	molecular_function	ribonucleoside binding
AB	0034062	molecular_function	5'-3' RNA polymerase activity
AB	0046872	molecular_function	metal ion binding
Ac	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ac	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Ac	0003712	molecular_function	transcription coregulator activity
Ac	0003713	molecular_function	transcription coactivator activity
Ac	0005515	molecular_function	protein binding
Ac	0005634	cellular_component	nucleus
Ac	0006351	biological_process	DNA-templated transcription
Ac	0006357	biological_process	regulation of transcription by RNA polymerase II
Ac	0016592	cellular_component	mediator complex
Ac	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ac	0034605	biological_process	cellular response to heat
Ac	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ac	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ac	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ac	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Ac	0070847	cellular_component	core mediator complex
AC	0000428	cellular_component	DNA-directed RNA polymerase complex
AC	0001172	biological_process	RNA-templated transcription
AC	0003677	molecular_function	DNA binding
AC	0003899	molecular_function	DNA-directed RNA polymerase activity
AC	0003968	molecular_function	RNA-directed RNA polymerase activity
AC	0005515	molecular_function	protein binding
AC	0005634	cellular_component	nucleus
AC	0005654	cellular_component	nucleoplasm
AC	0005665	cellular_component	RNA polymerase II, core complex
AC	0006351	biological_process	DNA-templated transcription
AC	0006366	biological_process	transcription by RNA polymerase II
AC	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AC	0006368	biological_process	transcription elongation by RNA polymerase II
AC	0006369	biological_process	termination of RNA polymerase II transcription
AC	0008270	molecular_function	zinc ion binding
AC	0046872	molecular_function	metal ion binding
AC	0046983	molecular_function	protein dimerization activity
Ad	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Ad	0003712	molecular_function	transcription coregulator activity
Ad	0005515	molecular_function	protein binding
Ad	0005634	cellular_component	nucleus
Ad	0006351	biological_process	DNA-templated transcription
Ad	0006357	biological_process	regulation of transcription by RNA polymerase II
Ad	0006366	biological_process	transcription by RNA polymerase II
Ad	0016592	cellular_component	mediator complex
Ad	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ad	0034605	biological_process	cellular response to heat
Ad	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ad	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ad	0070847	cellular_component	core mediator complex
AD	0000166	molecular_function	nucleotide binding
AD	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
AD	0000428	cellular_component	DNA-directed RNA polymerase complex
AD	0000932	cellular_component	P-body
AD	0001172	biological_process	RNA-templated transcription
AD	0003697	molecular_function	single-stranded DNA binding
AD	0003727	molecular_function	single-stranded RNA binding
AD	0003968	molecular_function	RNA-directed RNA polymerase activity
AD	0005515	molecular_function	protein binding
AD	0005634	cellular_component	nucleus
AD	0005665	cellular_component	RNA polymerase II, core complex
AD	0005737	cellular_component	cytoplasm
AD	0006352	biological_process	DNA-templated transcription initiation
AD	0006366	biological_process	transcription by RNA polymerase II
AD	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AD	0006368	biological_process	transcription elongation by RNA polymerase II
AD	0006397	biological_process	mRNA processing
AD	0030880	cellular_component	RNA polymerase complex
AD	0031369	molecular_function	translation initiation factor binding
AD	0045948	biological_process	positive regulation of translational initiation
Ae	0003674	molecular_function	molecular_function
Ae	0003712	molecular_function	transcription coregulator activity
Ae	0005515	molecular_function	protein binding
Ae	0005634	cellular_component	nucleus
Ae	0005739	cellular_component	mitochondrion
Ae	0006351	biological_process	DNA-templated transcription
Ae	0006357	biological_process	regulation of transcription by RNA polymerase II
Ae	0006366	biological_process	transcription by RNA polymerase II
Ae	0016592	cellular_component	mediator complex
Ae	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ae	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ae	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
AE	0000428	cellular_component	DNA-directed RNA polymerase complex
AE	0001172	biological_process	RNA-templated transcription
AE	0003677	molecular_function	DNA binding
AE	0003899	molecular_function	DNA-directed RNA polymerase activity
AE	0003968	molecular_function	RNA-directed RNA polymerase activity
AE	0005515	molecular_function	protein binding
AE	0005634	cellular_component	nucleus
AE	0005654	cellular_component	nucleoplasm
AE	0005665	cellular_component	RNA polymerase II, core complex
AE	0005666	cellular_component	RNA polymerase III complex
AE	0005736	cellular_component	RNA polymerase I complex
AE	0006351	biological_process	DNA-templated transcription
AE	0006360	biological_process	transcription by RNA polymerase I
AE	0006361	biological_process	transcription initiation at RNA polymerase I promoter
AE	0006362	biological_process	transcription elongation by RNA polymerase I
AE	0006363	biological_process	termination of RNA polymerase I transcription
AE	0006366	biological_process	transcription by RNA polymerase II
AE	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AE	0006368	biological_process	transcription elongation by RNA polymerase II
AE	0006383	biological_process	transcription by RNA polymerase III
AE	0006384	biological_process	transcription initiation at RNA polymerase III promoter
AE	0006386	biological_process	termination of RNA polymerase III transcription
AE	0042254	biological_process	ribosome biogenesis
AE	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
AE	0042797	biological_process	tRNA transcription by RNA polymerase III
Af	0003712	molecular_function	transcription coregulator activity
Af	0003713	molecular_function	transcription coactivator activity
Af	0005515	molecular_function	protein binding
Af	0005634	cellular_component	nucleus
Af	0006351	biological_process	DNA-templated transcription
Af	0006357	biological_process	regulation of transcription by RNA polymerase II
Af	0016592	cellular_component	mediator complex
Af	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Af	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Af	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Af	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Af	0070847	cellular_component	core mediator complex
AF	0000428	cellular_component	DNA-directed RNA polymerase complex
AF	0001172	biological_process	RNA-templated transcription
AF	0003677	molecular_function	DNA binding
AF	0003899	molecular_function	DNA-directed RNA polymerase activity
AF	0003968	molecular_function	RNA-directed RNA polymerase activity
AF	0005515	molecular_function	protein binding
AF	0005634	cellular_component	nucleus
AF	0005654	cellular_component	nucleoplasm
AF	0005665	cellular_component	RNA polymerase II, core complex
AF	0005666	cellular_component	RNA polymerase III complex
AF	0005736	cellular_component	RNA polymerase I complex
AF	0005737	cellular_component	cytoplasm
AF	0006351	biological_process	DNA-templated transcription
AF	0006360	biological_process	transcription by RNA polymerase I
AF	0006361	biological_process	transcription initiation at RNA polymerase I promoter
AF	0006362	biological_process	transcription elongation by RNA polymerase I
AF	0006363	biological_process	termination of RNA polymerase I transcription
AF	0006366	biological_process	transcription by RNA polymerase II
AF	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AF	0006368	biological_process	transcription elongation by RNA polymerase II
AF	0006383	biological_process	transcription by RNA polymerase III
AF	0006384	biological_process	transcription initiation at RNA polymerase III promoter
AF	0006386	biological_process	termination of RNA polymerase III transcription
AF	0042254	biological_process	ribosome biogenesis
AF	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
AF	0042797	biological_process	tRNA transcription by RNA polymerase III
Ag	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ag	0003712	molecular_function	transcription coregulator activity
Ag	0003713	molecular_function	transcription coactivator activity
Ag	0005515	molecular_function	protein binding
Ag	0005634	cellular_component	nucleus
Ag	0006351	biological_process	DNA-templated transcription
Ag	0006357	biological_process	regulation of transcription by RNA polymerase II
Ag	0016592	cellular_component	mediator complex
Ag	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ag	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ag	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ag	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ag	0070847	cellular_component	core mediator complex
AG	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
AG	0000428	cellular_component	DNA-directed RNA polymerase complex
AG	0000932	cellular_component	P-body
AG	0000956	biological_process	nuclear-transcribed mRNA catabolic process
AG	0001172	biological_process	RNA-templated transcription
AG	0003676	molecular_function	nucleic acid binding
AG	0003697	molecular_function	single-stranded DNA binding
AG	0003727	molecular_function	single-stranded RNA binding
AG	0003968	molecular_function	RNA-directed RNA polymerase activity
AG	0005515	molecular_function	protein binding
AG	0005634	cellular_component	nucleus
AG	0005665	cellular_component	RNA polymerase II, core complex
AG	0005737	cellular_component	cytoplasm
AG	0006351	biological_process	DNA-templated transcription
AG	0006352	biological_process	DNA-templated transcription initiation
AG	0006366	biological_process	transcription by RNA polymerase II
AG	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AG	0006368	biological_process	transcription elongation by RNA polymerase II
AG	0031369	molecular_function	translation initiation factor binding
AG	0045948	biological_process	positive regulation of translational initiation
AG	0060213	biological_process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
Ah	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ah	0000978	molecular_function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
Ah	0003677	molecular_function	DNA binding
Ah	0003712	molecular_function	transcription coregulator activity
Ah	0003714	molecular_function	transcription corepressor activity
Ah	0005515	molecular_function	protein binding
Ah	0005634	cellular_component	nucleus
Ah	0006351	biological_process	DNA-templated transcription
Ah	0006357	biological_process	regulation of transcription by RNA polymerase II
Ah	0016592	cellular_component	mediator complex
Ah	0017025	molecular_function	TBP-class protein binding
Ah	0030674	molecular_function	protein-macromolecule adaptor activity
Ah	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ah	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ah	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ah	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ah	0070847	cellular_component	core mediator complex
AH	0000428	cellular_component	DNA-directed RNA polymerase complex
AH	0001172	biological_process	RNA-templated transcription
AH	0003677	molecular_function	DNA binding
AH	0003899	molecular_function	DNA-directed RNA polymerase activity
AH	0003968	molecular_function	RNA-directed RNA polymerase activity
AH	0005515	molecular_function	protein binding
AH	0005634	cellular_component	nucleus
AH	0005654	cellular_component	nucleoplasm
AH	0005665	cellular_component	RNA polymerase II, core complex
AH	0005666	cellular_component	RNA polymerase III complex
AH	0005736	cellular_component	RNA polymerase I complex
AH	0006351	biological_process	DNA-templated transcription
AH	0006360	biological_process	transcription by RNA polymerase I
AH	0006361	biological_process	transcription initiation at RNA polymerase I promoter
AH	0006362	biological_process	transcription elongation by RNA polymerase I
AH	0006363	biological_process	termination of RNA polymerase I transcription
AH	0006366	biological_process	transcription by RNA polymerase II
AH	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AH	0006368	biological_process	transcription elongation by RNA polymerase II
AH	0006383	biological_process	transcription by RNA polymerase III
AH	0006384	biological_process	transcription initiation at RNA polymerase III promoter
AH	0006386	biological_process	termination of RNA polymerase III transcription
AH	0042254	biological_process	ribosome biogenesis
AH	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
AH	0042797	biological_process	tRNA transcription by RNA polymerase III
Ai	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ai	0003712	molecular_function	transcription coregulator activity
Ai	0003713	molecular_function	transcription coactivator activity
Ai	0005198	molecular_function	structural molecule activity
Ai	0005515	molecular_function	protein binding
Ai	0005634	cellular_component	nucleus
Ai	0005829	cellular_component	cytosol
Ai	0006351	biological_process	DNA-templated transcription
Ai	0006357	biological_process	regulation of transcription by RNA polymerase II
Ai	0016592	cellular_component	mediator complex
Ai	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ai	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ai	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ai	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ai	0070847	cellular_component	core mediator complex
AI	0000428	cellular_component	DNA-directed RNA polymerase complex
AI	0001172	biological_process	RNA-templated transcription
AI	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
AI	0003676	molecular_function	nucleic acid binding
AI	0003899	molecular_function	DNA-directed RNA polymerase activity
AI	0003968	molecular_function	RNA-directed RNA polymerase activity
AI	0005515	molecular_function	protein binding
AI	0005634	cellular_component	nucleus
AI	0005665	cellular_component	RNA polymerase II, core complex
AI	0005730	cellular_component	nucleolus
AI	0006281	biological_process	DNA repair
AI	0006283	biological_process	transcription-coupled nucleotide-excision repair
AI	0006351	biological_process	DNA-templated transcription
AI	0006366	biological_process	transcription by RNA polymerase II
AI	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AI	0006368	biological_process	transcription elongation by RNA polymerase II
AI	0006974	biological_process	DNA damage response
AI	0008270	molecular_function	zinc ion binding
AI	0046872	molecular_function	metal ion binding
Aj	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Aj	0003674	molecular_function	molecular_function
Aj	0003712	molecular_function	transcription coregulator activity
Aj	0005515	molecular_function	protein binding
Aj	0005634	cellular_component	nucleus
Aj	0006351	biological_process	DNA-templated transcription
Aj	0006357	biological_process	regulation of transcription by RNA polymerase II
Aj	0016592	cellular_component	mediator complex
Aj	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Aj	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Aj	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Aj	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Aj	0070847	cellular_component	core mediator complex
AJ	0000428	cellular_component	DNA-directed RNA polymerase complex
AJ	0001172	biological_process	RNA-templated transcription
AJ	0003677	molecular_function	DNA binding
AJ	0003899	molecular_function	DNA-directed RNA polymerase activity
AJ	0003968	molecular_function	RNA-directed RNA polymerase activity
AJ	0005515	molecular_function	protein binding
AJ	0005634	cellular_component	nucleus
AJ	0005654	cellular_component	nucleoplasm
AJ	0005665	cellular_component	RNA polymerase II, core complex
AJ	0005666	cellular_component	RNA polymerase III complex
AJ	0005730	cellular_component	nucleolus
AJ	0005736	cellular_component	RNA polymerase I complex
AJ	0006351	biological_process	DNA-templated transcription
AJ	0006360	biological_process	transcription by RNA polymerase I
AJ	0006361	biological_process	transcription initiation at RNA polymerase I promoter
AJ	0006362	biological_process	transcription elongation by RNA polymerase I
AJ	0006363	biological_process	termination of RNA polymerase I transcription
AJ	0006366	biological_process	transcription by RNA polymerase II
AJ	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AJ	0006368	biological_process	transcription elongation by RNA polymerase II
AJ	0006383	biological_process	transcription by RNA polymerase III
AJ	0006384	biological_process	transcription initiation at RNA polymerase III promoter
AJ	0006386	biological_process	termination of RNA polymerase III transcription
AJ	0008270	molecular_function	zinc ion binding
AJ	0042254	biological_process	ribosome biogenesis
AJ	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
AJ	0042797	biological_process	tRNA transcription by RNA polymerase III
AJ	0046872	molecular_function	metal ion binding
Ak	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ak	0001097	molecular_function	TFIIH-class transcription factor complex binding
Ak	0003712	molecular_function	transcription coregulator activity
Ak	0003713	molecular_function	transcription coactivator activity
Ak	0005515	molecular_function	protein binding
Ak	0005634	cellular_component	nucleus
Ak	0006351	biological_process	DNA-templated transcription
Ak	0006357	biological_process	regulation of transcription by RNA polymerase II
Ak	0016592	cellular_component	mediator complex
Ak	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ak	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ak	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ak	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ak	0070847	cellular_component	core mediator complex
AK	0000428	cellular_component	DNA-directed RNA polymerase complex
AK	0001172	biological_process	RNA-templated transcription
AK	0003677	molecular_function	DNA binding
AK	0003899	molecular_function	DNA-directed RNA polymerase activity
AK	0003968	molecular_function	RNA-directed RNA polymerase activity
AK	0005515	molecular_function	protein binding
AK	0005634	cellular_component	nucleus
AK	0005665	cellular_component	RNA polymerase II, core complex
AK	0006351	biological_process	DNA-templated transcription
AK	0006366	biological_process	transcription by RNA polymerase II
AK	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AK	0006368	biological_process	transcription elongation by RNA polymerase II
AK	0006369	biological_process	termination of RNA polymerase II transcription
AK	0046983	molecular_function	protein dimerization activity
AL	0000428	cellular_component	DNA-directed RNA polymerase complex
AL	0001172	biological_process	RNA-templated transcription
AL	0003677	molecular_function	DNA binding
AL	0003899	molecular_function	DNA-directed RNA polymerase activity
AL	0003968	molecular_function	RNA-directed RNA polymerase activity
AL	0005515	molecular_function	protein binding
AL	0005634	cellular_component	nucleus
AL	0005654	cellular_component	nucleoplasm
AL	0005665	cellular_component	RNA polymerase II, core complex
AL	0005666	cellular_component	RNA polymerase III complex
AL	0005730	cellular_component	nucleolus
AL	0005736	cellular_component	RNA polymerase I complex
AL	0005737	cellular_component	cytoplasm
AL	0005777	cellular_component	peroxisome
AL	0006351	biological_process	DNA-templated transcription
AL	0006360	biological_process	transcription by RNA polymerase I
AL	0006361	biological_process	transcription initiation at RNA polymerase I promoter
AL	0006362	biological_process	transcription elongation by RNA polymerase I
AL	0006363	biological_process	termination of RNA polymerase I transcription
AL	0006366	biological_process	transcription by RNA polymerase II
AL	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AL	0006368	biological_process	transcription elongation by RNA polymerase II
AL	0006383	biological_process	transcription by RNA polymerase III
AL	0006384	biological_process	transcription initiation at RNA polymerase III promoter
AL	0006386	biological_process	termination of RNA polymerase III transcription
AL	0008270	molecular_function	zinc ion binding
AL	0042254	biological_process	ribosome biogenesis
AL	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
AL	0042797	biological_process	tRNA transcription by RNA polymerase III
AL	0046872	molecular_function	metal ion binding
AM	0000993	molecular_function	RNA polymerase II complex binding
AM	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
AM	0001139	molecular_function	RNA polymerase II complex recruiting activity
AM	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
AM	0005515	molecular_function	protein binding
AM	0005634	cellular_component	nucleus
AM	0006351	biological_process	DNA-templated transcription
AM	0006352	biological_process	DNA-templated transcription initiation
AM	0008270	molecular_function	zinc ion binding
AM	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
AM	0017025	molecular_function	TBP-class protein binding
AM	0046872	molecular_function	metal ion binding
AM	0051123	biological_process	RNA polymerase II preinitiation complex assembly
AM	0070897	biological_process	transcription preinitiation complex assembly
AM	0097550	cellular_component	transcription preinitiation complex
An	0000122	biological_process	negative regulation of transcription by RNA polymerase II
An	0001093	molecular_function	TFIIB-class transcription factor binding
An	0003712	molecular_function	transcription coregulator activity
An	0005515	molecular_function	protein binding
An	0005634	cellular_component	nucleus
An	0006351	biological_process	DNA-templated transcription
An	0006357	biological_process	regulation of transcription by RNA polymerase II
An	0016592	cellular_component	mediator complex
An	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
An	0045944	biological_process	positive regulation of transcription by RNA polymerase II
An	0051123	biological_process	RNA polymerase II preinitiation complex assembly
An	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
An	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
An	0070847	cellular_component	core mediator complex
Ao	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ao	0001095	molecular_function	TFIIE-class transcription factor complex binding
Ao	0001097	molecular_function	TFIIH-class transcription factor complex binding
Ao	0003712	molecular_function	transcription coregulator activity
Ao	0003713	molecular_function	transcription coactivator activity
Ao	0005515	molecular_function	protein binding
Ao	0005634	cellular_component	nucleus
Ao	0006351	biological_process	DNA-templated transcription
Ao	0006355	biological_process	regulation of DNA-templated transcription
Ao	0006357	biological_process	regulation of transcription by RNA polymerase II
Ao	0016592	cellular_component	mediator complex
Ao	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ao	0034605	biological_process	cellular response to heat
Ao	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ao	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ao	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ao	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Ao	0070202	biological_process	regulation of establishment of protein localization to chromosome
Ao	0070847	cellular_component	core mediator complex
Ao	2000219	biological_process	positive regulation of invasive growth in response to glucose limitation
Ap	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ap	0003713	molecular_function	transcription coactivator activity
Ap	0005515	molecular_function	protein binding
Ap	0005634	cellular_component	nucleus
Ap	0006351	biological_process	DNA-templated transcription
Ap	0016592	cellular_component	mediator complex
Ap	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ap	0034605	biological_process	cellular response to heat
Ap	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ap	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ap	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ap	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Ap	0070202	biological_process	regulation of establishment of protein localization to chromosome
Ap	0070847	cellular_component	core mediator complex
AP	0001096	molecular_function	TFIIF-class transcription factor complex binding
AP	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
AP	0003677	molecular_function	DNA binding
AP	0005515	molecular_function	protein binding
AP	0005634	cellular_component	nucleus
AP	0005674	cellular_component	transcription factor TFIIF complex
AP	0006351	biological_process	DNA-templated transcription
AP	0006355	biological_process	regulation of DNA-templated transcription
AP	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AP	0006368	biological_process	transcription elongation by RNA polymerase II
AP	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
AP	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
AP	0051123	biological_process	RNA polymerase II preinitiation complex assembly
AP	0072542	molecular_function	protein phosphatase activator activity
Aq	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Aq	0001139	molecular_function	RNA polymerase II complex recruiting activity
Aq	0003712	molecular_function	transcription coregulator activity
Aq	0005515	molecular_function	protein binding
Aq	0005634	cellular_component	nucleus
Aq	0006351	biological_process	DNA-templated transcription
Aq	0006357	biological_process	regulation of transcription by RNA polymerase II
Aq	0006367	biological_process	transcription initiation at RNA polymerase II promoter
Aq	0016592	cellular_component	mediator complex
Aq	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Aq	0034605	biological_process	cellular response to heat
Aq	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Aq	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Aq	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Aq	0070847	cellular_component	core mediator complex
Aq	0140297	molecular_function	DNA-binding transcription factor binding
AQ	0000166	molecular_function	nucleotide binding
AQ	0000993	molecular_function	RNA polymerase II complex binding
AQ	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
AQ	0003677	molecular_function	DNA binding
AQ	0005515	molecular_function	protein binding
AQ	0005634	cellular_component	nucleus
AQ	0005674	cellular_component	transcription factor TFIIF complex
AQ	0006351	biological_process	DNA-templated transcription
AQ	0006355	biological_process	regulation of DNA-templated transcription
AQ	0006366	biological_process	transcription by RNA polymerase II
AQ	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AQ	0006368	biological_process	transcription elongation by RNA polymerase II
AQ	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ar	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Ar	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
Ar	0003712	molecular_function	transcription coregulator activity
Ar	0003713	molecular_function	transcription coactivator activity
Ar	0005515	molecular_function	protein binding
Ar	0005634	cellular_component	nucleus
Ar	0006351	biological_process	DNA-templated transcription
Ar	0006357	biological_process	regulation of transcription by RNA polymerase II
Ar	0006369	biological_process	termination of RNA polymerase II transcription
Ar	0016592	cellular_component	mediator complex
Ar	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ar	0034605	biological_process	cellular response to heat
Ar	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ar	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ar	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ar	0070847	cellular_component	core mediator complex
As	0000122	biological_process	negative regulation of transcription by RNA polymerase II
As	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
As	0003712	molecular_function	transcription coregulator activity
As	0003713	molecular_function	transcription coactivator activity
As	0005515	molecular_function	protein binding
As	0005634	cellular_component	nucleus
As	0006351	biological_process	DNA-templated transcription
As	0006357	biological_process	regulation of transcription by RNA polymerase II
As	0016592	cellular_component	mediator complex
As	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
As	0045944	biological_process	positive regulation of transcription by RNA polymerase II
As	0051123	biological_process	RNA polymerase II preinitiation complex assembly
As	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
As	0070847	cellular_component	core mediator complex
AS	0000977	molecular_function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
AS	0000993	molecular_function	RNA polymerase II complex binding
AS	0001139	molecular_function	RNA polymerase II complex recruiting activity
AS	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
AS	0003676	molecular_function	nucleic acid binding
AS	0003677	molecular_function	DNA binding
AS	0003711	molecular_function	transcription elongation factor activity
AS	0005515	molecular_function	protein binding
AS	0005634	cellular_component	nucleus
AS	0006351	biological_process	DNA-templated transcription
AS	0006362	biological_process	transcription elongation by RNA polymerase I
AS	0006367	biological_process	transcription initiation at RNA polymerase II promoter
AS	0006368	biological_process	transcription elongation by RNA polymerase II
AS	0006383	biological_process	transcription by RNA polymerase III
AS	0008270	molecular_function	zinc ion binding
AS	0031440	biological_process	regulation of mRNA 3'-end processing
AS	0031564	biological_process	transcription antitermination
AS	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
AS	0042797	biological_process	tRNA transcription by RNA polymerase III
AS	0045899	biological_process	positive regulation of RNA polymerase II transcription preinitiation complex assembly
AS	0046872	molecular_function	metal ion binding
AS	0051123	biological_process	RNA polymerase II preinitiation complex assembly
At	0001094	molecular_function	TFIID-class transcription factor complex binding
At	0003712	molecular_function	transcription coregulator activity
At	0003713	molecular_function	transcription coactivator activity
At	0005515	molecular_function	protein binding
At	0005634	cellular_component	nucleus
At	0006351	biological_process	DNA-templated transcription
At	0006357	biological_process	regulation of transcription by RNA polymerase II
At	0010688	biological_process	negative regulation of ribosomal protein gene transcription by RNA polymerase II
At	0016592	cellular_component	mediator complex
At	0019904	molecular_function	protein domain specific binding
At	0031669	biological_process	cellular response to nutrient levels
At	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
At	0032991	cellular_component	protein-containing complex
At	0045944	biological_process	positive regulation of transcription by RNA polymerase II
At	0051123	biological_process	RNA polymerase II preinitiation complex assembly
At	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
At	0070847	cellular_component	core mediator complex
Au	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Au	0003712	molecular_function	transcription coregulator activity
Au	0003713	molecular_function	transcription coactivator activity
Au	0003714	molecular_function	transcription corepressor activity
Au	0005515	molecular_function	protein binding
Au	0005634	cellular_component	nucleus
Au	0006351	biological_process	DNA-templated transcription
Au	0006357	biological_process	regulation of transcription by RNA polymerase II
Au	0016592	cellular_component	mediator complex
Au	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Au	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Au	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Au	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Au	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Au	0070847	cellular_component	core mediator complex
Av	0003674	molecular_function	molecular_function
Av	0003712	molecular_function	transcription coregulator activity
Av	0005515	molecular_function	protein binding
Av	0005634	cellular_component	nucleus
Av	0006351	biological_process	DNA-templated transcription
Av	0006357	biological_process	regulation of transcription by RNA polymerase II
Av	0016592	cellular_component	mediator complex
Av	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Av	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Av	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Av	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Av	0070847	cellular_component	core mediator complex
Aw	0003712	molecular_function	transcription coregulator activity
Aw	0003713	molecular_function	transcription coactivator activity
Aw	0005515	molecular_function	protein binding
Aw	0005634	cellular_component	nucleus
Aw	0006281	biological_process	DNA repair
Aw	0006310	biological_process	DNA recombination
Aw	0006311	biological_process	meiotic gene conversion
Aw	0006351	biological_process	DNA-templated transcription
Aw	0006355	biological_process	regulation of DNA-templated transcription
Aw	0006357	biological_process	regulation of transcription by RNA polymerase II
Aw	0006366	biological_process	transcription by RNA polymerase II
Aw	0016592	cellular_component	mediator complex
Aw	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Aw	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Aw	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Aw	0070847	cellular_component	core mediator complex
Az	0003677	molecular_function	DNA binding
Az	0006366	biological_process	transcription by RNA polymerase II
Ba	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Ba	0003674	molecular_function	molecular_function
Ba	0003712	molecular_function	transcription coregulator activity
Ba	0005515	molecular_function	protein binding
Ba	0005634	cellular_component	nucleus
Ba	0006351	biological_process	DNA-templated transcription
Ba	0006357	biological_process	regulation of transcription by RNA polymerase II
Ba	0016592	cellular_component	mediator complex
Ba	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Ba	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Ba	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Ba	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Ba	0070847	cellular_component	core mediator complex
BA	0003677	molecular_function	DNA binding
BA	0003899	molecular_function	DNA-directed RNA polymerase activity
BA	0006351	biological_process	DNA-templated transcription
Bb	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bb	0003713	molecular_function	transcription coactivator activity
Bb	0005515	molecular_function	protein binding
Bb	0005634	cellular_component	nucleus
Bb	0005829	cellular_component	cytosol
Bb	0006351	biological_process	DNA-templated transcription
Bb	0016592	cellular_component	mediator complex
Bb	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bb	0034976	biological_process	response to endoplasmic reticulum stress
Bb	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bb	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bb	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bb	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bb	0070847	cellular_component	core mediator complex
BB	0000428	cellular_component	DNA-directed RNA polymerase complex
BB	0001172	biological_process	RNA-templated transcription
BB	0003676	molecular_function	nucleic acid binding
BB	0003677	molecular_function	DNA binding
BB	0003729	molecular_function	mRNA binding
BB	0003899	molecular_function	DNA-directed RNA polymerase activity
BB	0003968	molecular_function	RNA-directed RNA polymerase activity
BB	0005515	molecular_function	protein binding
BB	0005634	cellular_component	nucleus
BB	0005665	cellular_component	RNA polymerase II, core complex
BB	0005739	cellular_component	mitochondrion
BB	0006351	biological_process	DNA-templated transcription
BB	0006354	biological_process	DNA-templated transcription elongation
BB	0006366	biological_process	transcription by RNA polymerase II
BB	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BB	0006368	biological_process	transcription elongation by RNA polymerase II
BB	0008270	molecular_function	zinc ion binding
BB	0010494	cellular_component	cytoplasmic stress granule
BB	0016740	molecular_function	transferase activity
BB	0016779	molecular_function	nucleotidyltransferase activity
BB	0032549	molecular_function	ribonucleoside binding
BB	0034062	molecular_function	5'-3' RNA polymerase activity
BB	0046872	molecular_function	metal ion binding
Bc	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bc	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Bc	0003712	molecular_function	transcription coregulator activity
Bc	0003713	molecular_function	transcription coactivator activity
Bc	0005515	molecular_function	protein binding
Bc	0005634	cellular_component	nucleus
Bc	0006351	biological_process	DNA-templated transcription
Bc	0006357	biological_process	regulation of transcription by RNA polymerase II
Bc	0016592	cellular_component	mediator complex
Bc	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bc	0034605	biological_process	cellular response to heat
Bc	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bc	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bc	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bc	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bc	0070847	cellular_component	core mediator complex
BC	0000428	cellular_component	DNA-directed RNA polymerase complex
BC	0001172	biological_process	RNA-templated transcription
BC	0003677	molecular_function	DNA binding
BC	0003899	molecular_function	DNA-directed RNA polymerase activity
BC	0003968	molecular_function	RNA-directed RNA polymerase activity
BC	0005515	molecular_function	protein binding
BC	0005634	cellular_component	nucleus
BC	0005654	cellular_component	nucleoplasm
BC	0005665	cellular_component	RNA polymerase II, core complex
BC	0006351	biological_process	DNA-templated transcription
BC	0006366	biological_process	transcription by RNA polymerase II
BC	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BC	0006368	biological_process	transcription elongation by RNA polymerase II
BC	0006369	biological_process	termination of RNA polymerase II transcription
BC	0008270	molecular_function	zinc ion binding
BC	0046872	molecular_function	metal ion binding
BC	0046983	molecular_function	protein dimerization activity
Bd	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Bd	0003712	molecular_function	transcription coregulator activity
Bd	0005515	molecular_function	protein binding
Bd	0005634	cellular_component	nucleus
Bd	0006351	biological_process	DNA-templated transcription
Bd	0006357	biological_process	regulation of transcription by RNA polymerase II
Bd	0006366	biological_process	transcription by RNA polymerase II
Bd	0016592	cellular_component	mediator complex
Bd	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bd	0034605	biological_process	cellular response to heat
Bd	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bd	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bd	0070847	cellular_component	core mediator complex
BD	0000166	molecular_function	nucleotide binding
BD	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
BD	0000428	cellular_component	DNA-directed RNA polymerase complex
BD	0000932	cellular_component	P-body
BD	0001172	biological_process	RNA-templated transcription
BD	0003697	molecular_function	single-stranded DNA binding
BD	0003727	molecular_function	single-stranded RNA binding
BD	0003968	molecular_function	RNA-directed RNA polymerase activity
BD	0005515	molecular_function	protein binding
BD	0005634	cellular_component	nucleus
BD	0005665	cellular_component	RNA polymerase II, core complex
BD	0005737	cellular_component	cytoplasm
BD	0006352	biological_process	DNA-templated transcription initiation
BD	0006366	biological_process	transcription by RNA polymerase II
BD	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BD	0006368	biological_process	transcription elongation by RNA polymerase II
BD	0006397	biological_process	mRNA processing
BD	0030880	cellular_component	RNA polymerase complex
BD	0031369	molecular_function	translation initiation factor binding
BD	0045948	biological_process	positive regulation of translational initiation
Be	0003674	molecular_function	molecular_function
Be	0003712	molecular_function	transcription coregulator activity
Be	0005515	molecular_function	protein binding
Be	0005634	cellular_component	nucleus
Be	0005739	cellular_component	mitochondrion
Be	0006351	biological_process	DNA-templated transcription
Be	0006357	biological_process	regulation of transcription by RNA polymerase II
Be	0006366	biological_process	transcription by RNA polymerase II
Be	0016592	cellular_component	mediator complex
Be	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Be	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Be	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
BE	0000428	cellular_component	DNA-directed RNA polymerase complex
BE	0001172	biological_process	RNA-templated transcription
BE	0003677	molecular_function	DNA binding
BE	0003899	molecular_function	DNA-directed RNA polymerase activity
BE	0003968	molecular_function	RNA-directed RNA polymerase activity
BE	0005515	molecular_function	protein binding
BE	0005634	cellular_component	nucleus
BE	0005654	cellular_component	nucleoplasm
BE	0005665	cellular_component	RNA polymerase II, core complex
BE	0005666	cellular_component	RNA polymerase III complex
BE	0005736	cellular_component	RNA polymerase I complex
BE	0006351	biological_process	DNA-templated transcription
BE	0006360	biological_process	transcription by RNA polymerase I
BE	0006361	biological_process	transcription initiation at RNA polymerase I promoter
BE	0006362	biological_process	transcription elongation by RNA polymerase I
BE	0006363	biological_process	termination of RNA polymerase I transcription
BE	0006366	biological_process	transcription by RNA polymerase II
BE	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BE	0006368	biological_process	transcription elongation by RNA polymerase II
BE	0006383	biological_process	transcription by RNA polymerase III
BE	0006384	biological_process	transcription initiation at RNA polymerase III promoter
BE	0006386	biological_process	termination of RNA polymerase III transcription
BE	0042254	biological_process	ribosome biogenesis
BE	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
BE	0042797	biological_process	tRNA transcription by RNA polymerase III
Bf	0003712	molecular_function	transcription coregulator activity
Bf	0003713	molecular_function	transcription coactivator activity
Bf	0005515	molecular_function	protein binding
Bf	0005634	cellular_component	nucleus
Bf	0006351	biological_process	DNA-templated transcription
Bf	0006357	biological_process	regulation of transcription by RNA polymerase II
Bf	0016592	cellular_component	mediator complex
Bf	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bf	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bf	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bf	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bf	0070847	cellular_component	core mediator complex
BF	0000428	cellular_component	DNA-directed RNA polymerase complex
BF	0001172	biological_process	RNA-templated transcription
BF	0003677	molecular_function	DNA binding
BF	0003899	molecular_function	DNA-directed RNA polymerase activity
BF	0003968	molecular_function	RNA-directed RNA polymerase activity
BF	0005515	molecular_function	protein binding
BF	0005634	cellular_component	nucleus
BF	0005654	cellular_component	nucleoplasm
BF	0005665	cellular_component	RNA polymerase II, core complex
BF	0005666	cellular_component	RNA polymerase III complex
BF	0005736	cellular_component	RNA polymerase I complex
BF	0005737	cellular_component	cytoplasm
BF	0006351	biological_process	DNA-templated transcription
BF	0006360	biological_process	transcription by RNA polymerase I
BF	0006361	biological_process	transcription initiation at RNA polymerase I promoter
BF	0006362	biological_process	transcription elongation by RNA polymerase I
BF	0006363	biological_process	termination of RNA polymerase I transcription
BF	0006366	biological_process	transcription by RNA polymerase II
BF	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BF	0006368	biological_process	transcription elongation by RNA polymerase II
BF	0006383	biological_process	transcription by RNA polymerase III
BF	0006384	biological_process	transcription initiation at RNA polymerase III promoter
BF	0006386	biological_process	termination of RNA polymerase III transcription
BF	0042254	biological_process	ribosome biogenesis
BF	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
BF	0042797	biological_process	tRNA transcription by RNA polymerase III
Bg	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bg	0003712	molecular_function	transcription coregulator activity
Bg	0003713	molecular_function	transcription coactivator activity
Bg	0005515	molecular_function	protein binding
Bg	0005634	cellular_component	nucleus
Bg	0006351	biological_process	DNA-templated transcription
Bg	0006357	biological_process	regulation of transcription by RNA polymerase II
Bg	0016592	cellular_component	mediator complex
Bg	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bg	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bg	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bg	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bg	0070847	cellular_component	core mediator complex
BG	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
BG	0000428	cellular_component	DNA-directed RNA polymerase complex
BG	0000932	cellular_component	P-body
BG	0000956	biological_process	nuclear-transcribed mRNA catabolic process
BG	0001172	biological_process	RNA-templated transcription
BG	0003676	molecular_function	nucleic acid binding
BG	0003697	molecular_function	single-stranded DNA binding
BG	0003727	molecular_function	single-stranded RNA binding
BG	0003968	molecular_function	RNA-directed RNA polymerase activity
BG	0005515	molecular_function	protein binding
BG	0005634	cellular_component	nucleus
BG	0005665	cellular_component	RNA polymerase II, core complex
BG	0005737	cellular_component	cytoplasm
BG	0006351	biological_process	DNA-templated transcription
BG	0006352	biological_process	DNA-templated transcription initiation
BG	0006366	biological_process	transcription by RNA polymerase II
BG	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BG	0006368	biological_process	transcription elongation by RNA polymerase II
BG	0031369	molecular_function	translation initiation factor binding
BG	0045948	biological_process	positive regulation of translational initiation
BG	0060213	biological_process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
Bh	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bh	0000978	molecular_function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
Bh	0003677	molecular_function	DNA binding
Bh	0003712	molecular_function	transcription coregulator activity
Bh	0003714	molecular_function	transcription corepressor activity
Bh	0005515	molecular_function	protein binding
Bh	0005634	cellular_component	nucleus
Bh	0006351	biological_process	DNA-templated transcription
Bh	0006357	biological_process	regulation of transcription by RNA polymerase II
Bh	0016592	cellular_component	mediator complex
Bh	0017025	molecular_function	TBP-class protein binding
Bh	0030674	molecular_function	protein-macromolecule adaptor activity
Bh	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bh	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bh	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bh	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bh	0070847	cellular_component	core mediator complex
BH	0000428	cellular_component	DNA-directed RNA polymerase complex
BH	0001172	biological_process	RNA-templated transcription
BH	0003677	molecular_function	DNA binding
BH	0003899	molecular_function	DNA-directed RNA polymerase activity
BH	0003968	molecular_function	RNA-directed RNA polymerase activity
BH	0005515	molecular_function	protein binding
BH	0005634	cellular_component	nucleus
BH	0005654	cellular_component	nucleoplasm
BH	0005665	cellular_component	RNA polymerase II, core complex
BH	0005666	cellular_component	RNA polymerase III complex
BH	0005736	cellular_component	RNA polymerase I complex
BH	0006351	biological_process	DNA-templated transcription
BH	0006360	biological_process	transcription by RNA polymerase I
BH	0006361	biological_process	transcription initiation at RNA polymerase I promoter
BH	0006362	biological_process	transcription elongation by RNA polymerase I
BH	0006363	biological_process	termination of RNA polymerase I transcription
BH	0006366	biological_process	transcription by RNA polymerase II
BH	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BH	0006368	biological_process	transcription elongation by RNA polymerase II
BH	0006383	biological_process	transcription by RNA polymerase III
BH	0006384	biological_process	transcription initiation at RNA polymerase III promoter
BH	0006386	biological_process	termination of RNA polymerase III transcription
BH	0042254	biological_process	ribosome biogenesis
BH	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
BH	0042797	biological_process	tRNA transcription by RNA polymerase III
Bi	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bi	0003712	molecular_function	transcription coregulator activity
Bi	0003713	molecular_function	transcription coactivator activity
Bi	0005198	molecular_function	structural molecule activity
Bi	0005515	molecular_function	protein binding
Bi	0005634	cellular_component	nucleus
Bi	0005829	cellular_component	cytosol
Bi	0006351	biological_process	DNA-templated transcription
Bi	0006357	biological_process	regulation of transcription by RNA polymerase II
Bi	0016592	cellular_component	mediator complex
Bi	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bi	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bi	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bi	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bi	0070847	cellular_component	core mediator complex
BI	0000428	cellular_component	DNA-directed RNA polymerase complex
BI	0001172	biological_process	RNA-templated transcription
BI	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
BI	0003676	molecular_function	nucleic acid binding
BI	0003899	molecular_function	DNA-directed RNA polymerase activity
BI	0003968	molecular_function	RNA-directed RNA polymerase activity
BI	0005515	molecular_function	protein binding
BI	0005634	cellular_component	nucleus
BI	0005665	cellular_component	RNA polymerase II, core complex
BI	0005730	cellular_component	nucleolus
BI	0006281	biological_process	DNA repair
BI	0006283	biological_process	transcription-coupled nucleotide-excision repair
BI	0006351	biological_process	DNA-templated transcription
BI	0006366	biological_process	transcription by RNA polymerase II
BI	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BI	0006368	biological_process	transcription elongation by RNA polymerase II
BI	0006974	biological_process	DNA damage response
BI	0008270	molecular_function	zinc ion binding
BI	0046872	molecular_function	metal ion binding
Bj	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bj	0003674	molecular_function	molecular_function
Bj	0003712	molecular_function	transcription coregulator activity
Bj	0005515	molecular_function	protein binding
Bj	0005634	cellular_component	nucleus
Bj	0006351	biological_process	DNA-templated transcription
Bj	0006357	biological_process	regulation of transcription by RNA polymerase II
Bj	0016592	cellular_component	mediator complex
Bj	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bj	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bj	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bj	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bj	0070847	cellular_component	core mediator complex
BJ	0000428	cellular_component	DNA-directed RNA polymerase complex
BJ	0001172	biological_process	RNA-templated transcription
BJ	0003677	molecular_function	DNA binding
BJ	0003899	molecular_function	DNA-directed RNA polymerase activity
BJ	0003968	molecular_function	RNA-directed RNA polymerase activity
BJ	0005515	molecular_function	protein binding
BJ	0005634	cellular_component	nucleus
BJ	0005654	cellular_component	nucleoplasm
BJ	0005665	cellular_component	RNA polymerase II, core complex
BJ	0005666	cellular_component	RNA polymerase III complex
BJ	0005730	cellular_component	nucleolus
BJ	0005736	cellular_component	RNA polymerase I complex
BJ	0006351	biological_process	DNA-templated transcription
BJ	0006360	biological_process	transcription by RNA polymerase I
BJ	0006361	biological_process	transcription initiation at RNA polymerase I promoter
BJ	0006362	biological_process	transcription elongation by RNA polymerase I
BJ	0006363	biological_process	termination of RNA polymerase I transcription
BJ	0006366	biological_process	transcription by RNA polymerase II
BJ	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BJ	0006368	biological_process	transcription elongation by RNA polymerase II
BJ	0006383	biological_process	transcription by RNA polymerase III
BJ	0006384	biological_process	transcription initiation at RNA polymerase III promoter
BJ	0006386	biological_process	termination of RNA polymerase III transcription
BJ	0008270	molecular_function	zinc ion binding
BJ	0042254	biological_process	ribosome biogenesis
BJ	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
BJ	0042797	biological_process	tRNA transcription by RNA polymerase III
BJ	0046872	molecular_function	metal ion binding
Bk	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bk	0001097	molecular_function	TFIIH-class transcription factor complex binding
Bk	0003712	molecular_function	transcription coregulator activity
Bk	0003713	molecular_function	transcription coactivator activity
Bk	0005515	molecular_function	protein binding
Bk	0005634	cellular_component	nucleus
Bk	0006351	biological_process	DNA-templated transcription
Bk	0006357	biological_process	regulation of transcription by RNA polymerase II
Bk	0016592	cellular_component	mediator complex
Bk	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bk	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bk	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bk	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bk	0070847	cellular_component	core mediator complex
BK	0000428	cellular_component	DNA-directed RNA polymerase complex
BK	0001172	biological_process	RNA-templated transcription
BK	0003677	molecular_function	DNA binding
BK	0003899	molecular_function	DNA-directed RNA polymerase activity
BK	0003968	molecular_function	RNA-directed RNA polymerase activity
BK	0005515	molecular_function	protein binding
BK	0005634	cellular_component	nucleus
BK	0005665	cellular_component	RNA polymerase II, core complex
BK	0006351	biological_process	DNA-templated transcription
BK	0006366	biological_process	transcription by RNA polymerase II
BK	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BK	0006368	biological_process	transcription elongation by RNA polymerase II
BK	0006369	biological_process	termination of RNA polymerase II transcription
BK	0046983	molecular_function	protein dimerization activity
BL	0000428	cellular_component	DNA-directed RNA polymerase complex
BL	0001172	biological_process	RNA-templated transcription
BL	0003677	molecular_function	DNA binding
BL	0003899	molecular_function	DNA-directed RNA polymerase activity
BL	0003968	molecular_function	RNA-directed RNA polymerase activity
BL	0005515	molecular_function	protein binding
BL	0005634	cellular_component	nucleus
BL	0005654	cellular_component	nucleoplasm
BL	0005665	cellular_component	RNA polymerase II, core complex
BL	0005666	cellular_component	RNA polymerase III complex
BL	0005730	cellular_component	nucleolus
BL	0005736	cellular_component	RNA polymerase I complex
BL	0005737	cellular_component	cytoplasm
BL	0005777	cellular_component	peroxisome
BL	0006351	biological_process	DNA-templated transcription
BL	0006360	biological_process	transcription by RNA polymerase I
BL	0006361	biological_process	transcription initiation at RNA polymerase I promoter
BL	0006362	biological_process	transcription elongation by RNA polymerase I
BL	0006363	biological_process	termination of RNA polymerase I transcription
BL	0006366	biological_process	transcription by RNA polymerase II
BL	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BL	0006368	biological_process	transcription elongation by RNA polymerase II
BL	0006383	biological_process	transcription by RNA polymerase III
BL	0006384	biological_process	transcription initiation at RNA polymerase III promoter
BL	0006386	biological_process	termination of RNA polymerase III transcription
BL	0008270	molecular_function	zinc ion binding
BL	0042254	biological_process	ribosome biogenesis
BL	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
BL	0042797	biological_process	tRNA transcription by RNA polymerase III
BL	0046872	molecular_function	metal ion binding
BM	0000993	molecular_function	RNA polymerase II complex binding
BM	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
BM	0001139	molecular_function	RNA polymerase II complex recruiting activity
BM	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
BM	0005515	molecular_function	protein binding
BM	0005634	cellular_component	nucleus
BM	0006351	biological_process	DNA-templated transcription
BM	0006352	biological_process	DNA-templated transcription initiation
BM	0008270	molecular_function	zinc ion binding
BM	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
BM	0017025	molecular_function	TBP-class protein binding
BM	0046872	molecular_function	metal ion binding
BM	0051123	biological_process	RNA polymerase II preinitiation complex assembly
BM	0070897	biological_process	transcription preinitiation complex assembly
BM	0097550	cellular_component	transcription preinitiation complex
Bn	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bn	0001093	molecular_function	TFIIB-class transcription factor binding
Bn	0003712	molecular_function	transcription coregulator activity
Bn	0005515	molecular_function	protein binding
Bn	0005634	cellular_component	nucleus
Bn	0006351	biological_process	DNA-templated transcription
Bn	0006357	biological_process	regulation of transcription by RNA polymerase II
Bn	0016592	cellular_component	mediator complex
Bn	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bn	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bn	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bn	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bn	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bn	0070847	cellular_component	core mediator complex
Bo	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bo	0001095	molecular_function	TFIIE-class transcription factor complex binding
Bo	0001097	molecular_function	TFIIH-class transcription factor complex binding
Bo	0003712	molecular_function	transcription coregulator activity
Bo	0003713	molecular_function	transcription coactivator activity
Bo	0005515	molecular_function	protein binding
Bo	0005634	cellular_component	nucleus
Bo	0006351	biological_process	DNA-templated transcription
Bo	0006355	biological_process	regulation of DNA-templated transcription
Bo	0006357	biological_process	regulation of transcription by RNA polymerase II
Bo	0016592	cellular_component	mediator complex
Bo	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bo	0034605	biological_process	cellular response to heat
Bo	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bo	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bo	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bo	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bo	0070202	biological_process	regulation of establishment of protein localization to chromosome
Bo	0070847	cellular_component	core mediator complex
Bo	2000219	biological_process	positive regulation of invasive growth in response to glucose limitation
Bp	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bp	0003713	molecular_function	transcription coactivator activity
Bp	0005515	molecular_function	protein binding
Bp	0005634	cellular_component	nucleus
Bp	0006351	biological_process	DNA-templated transcription
Bp	0016592	cellular_component	mediator complex
Bp	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bp	0034605	biological_process	cellular response to heat
Bp	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bp	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bp	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bp	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bp	0070202	biological_process	regulation of establishment of protein localization to chromosome
Bp	0070847	cellular_component	core mediator complex
BP	0001096	molecular_function	TFIIF-class transcription factor complex binding
BP	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
BP	0003677	molecular_function	DNA binding
BP	0005515	molecular_function	protein binding
BP	0005634	cellular_component	nucleus
BP	0005674	cellular_component	transcription factor TFIIF complex
BP	0006351	biological_process	DNA-templated transcription
BP	0006355	biological_process	regulation of DNA-templated transcription
BP	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BP	0006368	biological_process	transcription elongation by RNA polymerase II
BP	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
BP	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
BP	0051123	biological_process	RNA polymerase II preinitiation complex assembly
BP	0072542	molecular_function	protein phosphatase activator activity
Bq	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Bq	0001139	molecular_function	RNA polymerase II complex recruiting activity
Bq	0003712	molecular_function	transcription coregulator activity
Bq	0005515	molecular_function	protein binding
Bq	0005634	cellular_component	nucleus
Bq	0006351	biological_process	DNA-templated transcription
Bq	0006357	biological_process	regulation of transcription by RNA polymerase II
Bq	0006367	biological_process	transcription initiation at RNA polymerase II promoter
Bq	0016592	cellular_component	mediator complex
Bq	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bq	0034605	biological_process	cellular response to heat
Bq	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bq	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bq	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bq	0070847	cellular_component	core mediator complex
Bq	0140297	molecular_function	DNA-binding transcription factor binding
BQ	0000166	molecular_function	nucleotide binding
BQ	0000993	molecular_function	RNA polymerase II complex binding
BQ	0001174	biological_process	transcriptional start site selection at RNA polymerase II promoter
BQ	0003677	molecular_function	DNA binding
BQ	0005515	molecular_function	protein binding
BQ	0005634	cellular_component	nucleus
BQ	0005674	cellular_component	transcription factor TFIIF complex
BQ	0006351	biological_process	DNA-templated transcription
BQ	0006355	biological_process	regulation of DNA-templated transcription
BQ	0006366	biological_process	transcription by RNA polymerase II
BQ	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BQ	0006368	biological_process	transcription elongation by RNA polymerase II
BQ	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Br	0000979	molecular_function	RNA polymerase II core promoter sequence-specific DNA binding
Br	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
Br	0003712	molecular_function	transcription coregulator activity
Br	0003713	molecular_function	transcription coactivator activity
Br	0005515	molecular_function	protein binding
Br	0005634	cellular_component	nucleus
Br	0006351	biological_process	DNA-templated transcription
Br	0006357	biological_process	regulation of transcription by RNA polymerase II
Br	0006369	biological_process	termination of RNA polymerase II transcription
Br	0016592	cellular_component	mediator complex
Br	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Br	0034605	biological_process	cellular response to heat
Br	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Br	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Br	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Br	0070847	cellular_component	core mediator complex
Bs	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bs	0001113	biological_process	transcription open complex formation at RNA polymerase II promoter
Bs	0003712	molecular_function	transcription coregulator activity
Bs	0003713	molecular_function	transcription coactivator activity
Bs	0005515	molecular_function	protein binding
Bs	0005634	cellular_component	nucleus
Bs	0006351	biological_process	DNA-templated transcription
Bs	0006357	biological_process	regulation of transcription by RNA polymerase II
Bs	0016592	cellular_component	mediator complex
Bs	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bs	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bs	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bs	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bs	0070847	cellular_component	core mediator complex
BS	0000977	molecular_function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
BS	0000993	molecular_function	RNA polymerase II complex binding
BS	0001139	molecular_function	RNA polymerase II complex recruiting activity
BS	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
BS	0003676	molecular_function	nucleic acid binding
BS	0003677	molecular_function	DNA binding
BS	0003711	molecular_function	transcription elongation factor activity
BS	0005515	molecular_function	protein binding
BS	0005634	cellular_component	nucleus
BS	0006351	biological_process	DNA-templated transcription
BS	0006362	biological_process	transcription elongation by RNA polymerase I
BS	0006367	biological_process	transcription initiation at RNA polymerase II promoter
BS	0006368	biological_process	transcription elongation by RNA polymerase II
BS	0006383	biological_process	transcription by RNA polymerase III
BS	0008270	molecular_function	zinc ion binding
BS	0031440	biological_process	regulation of mRNA 3'-end processing
BS	0031564	biological_process	transcription antitermination
BS	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
BS	0042797	biological_process	tRNA transcription by RNA polymerase III
BS	0045899	biological_process	positive regulation of RNA polymerase II transcription preinitiation complex assembly
BS	0046872	molecular_function	metal ion binding
BS	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bt	0001094	molecular_function	TFIID-class transcription factor complex binding
Bt	0003712	molecular_function	transcription coregulator activity
Bt	0003713	molecular_function	transcription coactivator activity
Bt	0005515	molecular_function	protein binding
Bt	0005634	cellular_component	nucleus
Bt	0006351	biological_process	DNA-templated transcription
Bt	0006357	biological_process	regulation of transcription by RNA polymerase II
Bt	0010688	biological_process	negative regulation of ribosomal protein gene transcription by RNA polymerase II
Bt	0016592	cellular_component	mediator complex
Bt	0019904	molecular_function	protein domain specific binding
Bt	0031669	biological_process	cellular response to nutrient levels
Bt	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bt	0032991	cellular_component	protein-containing complex
Bt	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bt	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bt	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bt	0070847	cellular_component	core mediator complex
Bu	0000122	biological_process	negative regulation of transcription by RNA polymerase II
Bu	0003712	molecular_function	transcription coregulator activity
Bu	0003713	molecular_function	transcription coactivator activity
Bu	0003714	molecular_function	transcription corepressor activity
Bu	0005515	molecular_function	protein binding
Bu	0005634	cellular_component	nucleus
Bu	0006351	biological_process	DNA-templated transcription
Bu	0006357	biological_process	regulation of transcription by RNA polymerase II
Bu	0016592	cellular_component	mediator complex
Bu	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bu	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bu	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bu	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bu	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
Bu	0070847	cellular_component	core mediator complex
Bv	0003674	molecular_function	molecular_function
Bv	0003712	molecular_function	transcription coregulator activity
Bv	0005515	molecular_function	protein binding
Bv	0005634	cellular_component	nucleus
Bv	0006351	biological_process	DNA-templated transcription
Bv	0006357	biological_process	regulation of transcription by RNA polymerase II
Bv	0016592	cellular_component	mediator complex
Bv	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bv	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Bv	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bv	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bv	0070847	cellular_component	core mediator complex
Bw	0003712	molecular_function	transcription coregulator activity
Bw	0003713	molecular_function	transcription coactivator activity
Bw	0005515	molecular_function	protein binding
Bw	0005634	cellular_component	nucleus
Bw	0006281	biological_process	DNA repair
Bw	0006310	biological_process	DNA recombination
Bw	0006311	biological_process	meiotic gene conversion
Bw	0006351	biological_process	DNA-templated transcription
Bw	0006355	biological_process	regulation of DNA-templated transcription
Bw	0006357	biological_process	regulation of transcription by RNA polymerase II
Bw	0006366	biological_process	transcription by RNA polymerase II
Bw	0016592	cellular_component	mediator complex
Bw	0032968	biological_process	positive regulation of transcription elongation by RNA polymerase II
Bw	0051123	biological_process	RNA polymerase II preinitiation complex assembly
Bw	0060261	biological_process	positive regulation of transcription initiation by RNA polymerase II
Bw	0070847	cellular_component	core mediator complex
Bz	0003677	molecular_function	DNA binding
Bz	0006366	biological_process	transcription by RNA polymerase II
GA	0000981	molecular_function	DNA-binding transcription factor activity, RNA polymerase II-specific
GA	0003700	molecular_function	DNA-binding transcription factor activity
GA	0006355	biological_process	regulation of DNA-templated transcription
GA	0008270	molecular_function	zinc ion binding
GB	0000981	molecular_function	DNA-binding transcription factor activity, RNA polymerase II-specific
GB	0003700	molecular_function	DNA-binding transcription factor activity
GB	0006355	biological_process	regulation of DNA-templated transcription
GB	0008270	molecular_function	zinc ion binding

Functional Information from PROSITE/UniProt

site_id	PS00115
Number of Residues	7
Details	RNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS

Chain	Residue	Details
Bz	TYR3-SER9
Bz	TYR10-SER16
Bz	TYR17-SER23

---

site_id	PS00446
Number of Residues	41
Details	RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP

Chain	Residue	Details
BC	ASN31-PRO71

---

site_id	PS00463
Number of Residues	29
Details	ZN2_CY6_FUNGAL_1 Zn(2)-C6 fungal-type DNA-binding domain signature. ACdiCRlkKlkCskekpk......CakClknnwe..C

Chain	Residue	Details
GA	ALA10-CYS38

---

site_id	PS00466
Number of Residues	36
Details	ZF_TFIIS_1 Zinc finger TFIIS-type signature. CpkChsrenvffqSQQRRkDTSmvlffvCls...CshiF

Chain	Residue	Details
AI	CYS75-PHE110
AS	CYS271-TRP306

---

site_id	PS00782
Number of Residues	16
Details	TFIIB Transcription factor TFIIB repeat signature. GKsmeSIMAASILIGC

Chain	Residue	Details
AM	GLY165-CYS180

---

site_id	PS01030
Number of Residues	27
Details	RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCRDCNNMLypredkennrllfeCrtC

Chain	Residue	Details
AI	PHE6-CYS32

---

site_id	PS01110
Number of Residues	14
Details	RNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHirLssDE

Chain	Residue	Details
AE	HIS147-GLU160

---

site_id	PS01111
Number of Residues	15
Details	RNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARiLGtRAlQ

Chain	Residue	Details
AF	THR86-GLN100

---

site_id	PS01112
Number of Residues	10
Details	RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG

Chain	Residue	Details
AJ	ILE2-GLY11

---

site_id	PS01154
Number of Residues	32
Details	RNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. FekEdHTLgNlIraeLlndrkVlfaaYkveHP

Chain	Residue	Details
AK	PHE35-PRO66

---

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT

Chain	Residue	Details
BB	GLY977-THR989

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Modified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	78
Details	Motif: {"description":"Nuclear localization signal","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	54
Details	DNA binding: {"description":"Zn(2)-C6 fungal-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00227","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"18611375","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3COQ","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	234
Details	Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	6
Details	Modified residue: {"description":"N-acetylserine","evidences":[{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	12
Details	Repeat: {"description":"18"}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	12
Details	Repeat: {"description":"19"}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	12
Details	Repeat: {"description":"20"}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	24
Details	Region: {"description":"Lid loop"}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	34
Details	Region: {"description":"Rudder loop"}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	24
Details	Region: {"description":"Bridging helix"}

Chain

Residue

Details

---

site_id	SWS_FT_FI13
Number of Residues	22
Details	Binding site: {"evidences":[{"source":"PubMed","id":"23151482","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25652824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4BBR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V1M","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI14
Number of Residues	10
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI15
Number of Residues	2
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"32142654","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI16
Number of Residues	84
Details	Zinc finger: {"description":"C4-type"}

Chain

Residue

Details

---

site_id	SWS_FT_FI17
Number of Residues	22
Details	Region: {"description":"Fork loop 1"}

Chain

Residue

Details

---

site_id	SWS_FT_FI18
Number of Residues	26
Details	Binding site: {}

Chain

Residue

Details

---

site_id	SWS_FT_FI19
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI20
Number of Residues	42
Details	Region: {"description":"Leucine-zipper"}

Chain

Residue

Details

---

site_id	SWS_FT_FI21
Number of Residues	46
Details	Region: {"description":"Non-specific ssDNA binding","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI22
Number of Residues	50
Details	Zinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI23
Number of Residues	160
Details	Zinc finger: {"description":"TFIIS-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI24
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10145","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11313498","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11805306","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11313499","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI25
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11313498","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11805306","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11313499","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI26
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI27
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"15537538","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1TWF","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI28
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00469","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI29
Number of Residues	232
Details	Domain: {"description":"TFIIS central","evidences":[{"source":"PROSITE-ProRule","id":"PRU00651","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI30
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00472","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

Catalytic Information from CSA

site_id	MCSA1
Number of Residues	1
Details	M-CSA 788

Chain

Residue

Details

---

site_id	MCSA2
Number of Residues	1
Details	M-CSA 788

Chain

Residue

Details

---