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7U8F

Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2) and the molecular glue DKY709

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0016020cellular_componentmembrane
A0016567biological_processprotein ubiquitination
A0030177biological_processpositive regulation of Wnt signaling pathway
A0031333biological_processnegative regulation of protein-containing complex assembly
A0031334biological_processpositive regulation of protein-containing complex assembly
A0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
A0034766biological_processnegative regulation of monoatomic ion transmembrane transport
A0035641biological_processlocomotory exploration behavior
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0044325molecular_functiontransmembrane transporter binding
A0046872molecular_functionmetal ion binding
A0048471cellular_componentperinuclear region of cytoplasm
B0003676molecular_functionnucleic acid binding
B0005634cellular_componentnucleus
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0016020cellular_componentmembrane
D0016567biological_processprotein ubiquitination
D0030177biological_processpositive regulation of Wnt signaling pathway
D0031333biological_processnegative regulation of protein-containing complex assembly
D0031334biological_processpositive regulation of protein-containing complex assembly
D0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
D0034766biological_processnegative regulation of monoatomic ion transmembrane transport
D0035641biological_processlocomotory exploration behavior
D0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
D0044325molecular_functiontransmembrane transporter binding
D0046872molecular_functionmetal ion binding
D0048471cellular_componentperinuclear region of cytoplasm
E0003676molecular_functionnucleic acid binding
E0005634cellular_componentnucleus
Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues21
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cnq..CgasFtqkgnllrHikl..H
ChainResidueDetails
CCYS142-HIS162

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:19413330
ChainResidueDetails
BSER2
ESER2
AHIS378
ATRP380
ATRP386
ACYS391
ACYS394
DCYS323
DCYS326
DHIS378
DTRP380
DTRP386
DCYS391
DCYS394

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
BLYS1067
ELYS1067

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q9ESW0
ChainResidueDetails
BTHR1125
ETHR1125

site_idSWS_FT_FI4
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
BLYS1121
ELYS1121

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PDB entries from 2024-06-12

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