Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7OK0

Cryo-EM structure of the Sulfolobus acidocaldarius RNA polymerase at 2.88 A

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed RNA polymerase activity
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0008270	molecular_function	zinc ion binding
A	0034062	molecular_function	5'-3' RNA polymerase activity
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0003677	molecular_function	DNA binding
B	0003899	molecular_function	DNA-directed RNA polymerase activity
B	0005737	cellular_component	cytoplasm
B	0006351	biological_process	DNA-templated transcription
B	0008270	molecular_function	zinc ion binding
B	0032549	molecular_function	ribonucleoside binding
B	0034062	molecular_function	5'-3' RNA polymerase activity
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed RNA polymerase activity
C	0005737	cellular_component	cytoplasm
C	0006351	biological_process	DNA-templated transcription
C	0034062	molecular_function	5'-3' RNA polymerase activity
D	0000428	cellular_component	DNA-directed RNA polymerase complex
D	0003677	molecular_function	DNA binding
D	0003899	molecular_function	DNA-directed RNA polymerase activity
D	0005737	cellular_component	cytoplasm
D	0006351	biological_process	DNA-templated transcription
D	0034062	molecular_function	5'-3' RNA polymerase activity
D	0046983	molecular_function	protein dimerization activity
D	0051536	molecular_function	iron-sulfur cluster binding
E	0000428	cellular_component	DNA-directed RNA polymerase complex
E	0003676	molecular_function	nucleic acid binding
E	0003677	molecular_function	DNA binding
E	0003899	molecular_function	DNA-directed RNA polymerase activity
E	0005737	cellular_component	cytoplasm
E	0006351	biological_process	DNA-templated transcription
E	0006352	biological_process	DNA-templated transcription initiation
E	0034062	molecular_function	5'-3' RNA polymerase activity
F	0000166	molecular_function	nucleotide binding
F	0000428	cellular_component	DNA-directed RNA polymerase complex
F	0003899	molecular_function	DNA-directed RNA polymerase activity
F	0005737	cellular_component	cytoplasm
F	0006351	biological_process	DNA-templated transcription
F	0006352	biological_process	DNA-templated transcription initiation
F	0030880	cellular_component	RNA polymerase complex
F	0034062	molecular_function	5'-3' RNA polymerase activity
G	0000428	cellular_component	DNA-directed RNA polymerase complex
G	0003899	molecular_function	DNA-directed RNA polymerase activity
G	0005737	cellular_component	cytoplasm
G	0006351	biological_process	DNA-templated transcription
G	0034062	molecular_function	5'-3' RNA polymerase activity
H	0000428	cellular_component	DNA-directed RNA polymerase complex
H	0003677	molecular_function	DNA binding
H	0003899	molecular_function	DNA-directed RNA polymerase activity
H	0005737	cellular_component	cytoplasm
H	0006351	biological_process	DNA-templated transcription
H	0006362	biological_process	transcription elongation by RNA polymerase I
H	0006366	biological_process	transcription by RNA polymerase II
H	0034062	molecular_function	5'-3' RNA polymerase activity
H	0042797	biological_process	tRNA transcription by RNA polymerase III
K	0000428	cellular_component	DNA-directed RNA polymerase complex
K	0003677	molecular_function	DNA binding
K	0003899	molecular_function	DNA-directed RNA polymerase activity
K	0005737	cellular_component	cytoplasm
K	0006351	biological_process	DNA-templated transcription
K	0006360	biological_process	transcription by RNA polymerase I
K	0006366	biological_process	transcription by RNA polymerase II
K	0034062	molecular_function	5'-3' RNA polymerase activity
K	0042797	biological_process	tRNA transcription by RNA polymerase III
L	0000428	cellular_component	DNA-directed RNA polymerase complex
L	0003677	molecular_function	DNA binding
L	0003899	molecular_function	DNA-directed RNA polymerase activity
L	0005737	cellular_component	cytoplasm
L	0006351	biological_process	DNA-templated transcription
L	0034062	molecular_function	5'-3' RNA polymerase activity
L	0046983	molecular_function	protein dimerization activity
N	0000428	cellular_component	DNA-directed RNA polymerase complex
N	0003677	molecular_function	DNA binding
N	0003899	molecular_function	DNA-directed RNA polymerase activity
N	0005737	cellular_component	cytoplasm
N	0006351	biological_process	DNA-templated transcription
N	0008270	molecular_function	zinc ion binding
N	0034062	molecular_function	5'-3' RNA polymerase activity
P	0000428	cellular_component	DNA-directed RNA polymerase complex
P	0003677	molecular_function	DNA binding
P	0003899	molecular_function	DNA-directed RNA polymerase activity
P	0005737	cellular_component	cytoplasm
P	0006351	biological_process	DNA-templated transcription
P	0008270	molecular_function	zinc ion binding
P	0034062	molecular_function	5'-3' RNA polymerase activity
Q	0000428	cellular_component	DNA-directed RNA polymerase complex
Q	0003899	molecular_function	DNA-directed RNA polymerase activity
Q	0005737	cellular_component	cytoplasm
Q	0006351	biological_process	DNA-templated transcription

Functional Information from PROSITE/UniProt

site_id	PS00061
Number of Residues	29
Details	ADH_SHORT Short-chain dehydrogenases/reductases family signature. SyslktieehFvpYSIAKKYIkELIdTGS

Chain	Residue	Details
F	SER2-SER30

site_id	PS00446
Number of Residues	41
Details	RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSIRRasilyvpvmAvdeVyfieNnSplyDEiLAhRLALVP

Chain	Residue	Details
D	ASN26-PRO66

site_id	PS01110
Number of Residues	14
Details	RNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHeiLqlEE

Chain	Residue	Details
H	HIS14-GLU27

site_id	PS01111
Number of Residues	15
Details	RNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYEiARiISaRAlQ

Chain	Residue	Details
K	THR19-GLN33

site_id	PS01112
Number of Residues	10
Details	RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPIrCFTCG

Chain	Residue	Details
N	ILE2-GLY11

site_id	PS01154
Number of Residues	32
Details	RNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. IdgEeHTIgNlLkgmLlkvpgVkfaaYslpHP

Chain	Residue	Details
L	ILE17-PRO48

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKFATrHGQKGV

Chain	Residue	Details
B	GLY873-VAL885

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00863","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00863","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00320","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00250","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00615","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34535646","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7OK0","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQ4","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OQY","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	10
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)