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7N3Y

Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain E59Q/D222N Mutant in Complex with DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003824molecular_functioncatalytic activity
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0003677molecular_functionDNA binding
B0003824molecular_functioncatalytic activity
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
C0003677molecular_functionDNA binding
C0003824molecular_functioncatalytic activity
C0004518molecular_functionnuclease activity
C0004519molecular_functionendonuclease activity
C0006281biological_processDNA repair
D0003677molecular_functionDNA binding
D0003824molecular_functioncatalytic activity
D0004518molecular_functionnuclease activity
D0004519molecular_functionendonuclease activity
D0006281biological_processDNA repair
Functional Information from PROSITE/UniProt
site_idPS00728
Number of Residues12
DetailsAP_NUCLEASE_F1_3 AP endonucleases family 1 signature 3. NyGsRIDFiLvS
ChainResidueDetails
AASN322-SER333

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
ATYR181
BTYR181
CTYR181
DTYR181

site_idSWS_FT_FI2
Number of Residues4
DetailsACT_SITE: Proton donor/acceptor => ECO:0000250
ChainResidueDetails
AASN222
BASN222
CASN222
DASN222

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLN59
AASN222
AASN224
AASP353
BGLN59
BASN222
BASN224
BASP353
CGLN59
CASN222
CASN224
CASP353
DGLN59
DASN222
DASN224
DASP353

site_idSWS_FT_FI4
Number of Residues4
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AASN224
BASN224
CASN224
DASN224

site_idSWS_FT_FI5
Number of Residues4
DetailsSITE: Important for catalytic activity => ECO:0000250
ChainResidueDetails
AASP328
BASP328
CASP328
DASP328

site_idSWS_FT_FI6
Number of Residues4
DetailsSITE: Interaction with DNA substrate => ECO:0000250
ChainResidueDetails
AHIS354
BHIS354
CHIS354
DHIS354

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PDB entries from 2024-05-29

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