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7MEY

Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron

Functional Information from GO Data
ChainGOidnamespacecontents
A0000151cellular_componentubiquitin ligase complex
A0000209biological_processprotein polyubiquitination
A0004842molecular_functionubiquitin-protein transferase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006513biological_processprotein monoubiquitination
A0008270molecular_functionzinc ion binding
A0008540cellular_componentproteasome regulatory particle, base subcomplex
A0016567biological_processprotein ubiquitination
A0016740molecular_functiontransferase activity
A0034620biological_processcellular response to unfolded protein
A0036503biological_processERAD pathway
A0046872molecular_functionmetal ion binding
A0061630molecular_functionubiquitin protein ligase activity
A0071596biological_processubiquitin-dependent protein catabolic process via the N-end rule pathway
A0071629biological_processcytoplasm protein quality control by the ubiquitin-proteasome system
A0072671biological_processmitochondria-associated ubiquitin-dependent protein catabolic process
A0090089biological_processregulation of dipeptide transport
A0120174biological_processstress-induced homeostatically regulated protein degradation pathway
A1904855molecular_functionproteasome regulatory particle binding
A1990116biological_processribosome-associated ubiquitin-dependent protein catabolic process
A1990303cellular_componentUBR1-RAD6 ubiquitin ligase complex
B0000209biological_processprotein polyubiquitination
B0000722biological_processtelomere maintenance via recombination
B0000724biological_processdouble-strand break repair via homologous recombination
B0000781cellular_componentchromosome, telomeric region
B0000785cellular_componentchromatin
B0003697molecular_functionsingle-stranded DNA binding
B0004842molecular_functionubiquitin-protein transferase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006325biological_processchromatin organization
B0006353biological_processDNA-templated transcription termination
B0006366biological_processtranscription by RNA polymerase II
B0006511biological_processubiquitin-dependent protein catabolic process
B0009302biological_processsno(s)RNA transcription
B0016567biological_processprotein ubiquitination
B0016740molecular_functiontransferase activity
B0017116molecular_functionsingle-stranded DNA helicase activity
B0030435biological_processsporulation resulting in formation of a cellular spore
B0031509biological_processsubtelomeric heterochromatin formation
B0031571biological_processmitotic G1 DNA damage checkpoint signaling
B0032508biological_processDNA duplex unwinding
B0033503cellular_componentHULC complex
B0034620biological_processcellular response to unfolded protein
B0036503biological_processERAD pathway
B0042138biological_processmeiotic DNA double-strand break formation
B0042275biological_processerror-free postreplication DNA repair
B0042276biological_processerror-prone translesion synthesis
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0061631molecular_functionubiquitin conjugating enzyme activity
B0070628molecular_functionproteasome binding
B0070987biological_processerror-free translesion synthesis
B0071596biological_processubiquitin-dependent protein catabolic process via the N-end rule pathway
B0071629biological_processcytoplasm protein quality control by the ubiquitin-proteasome system
B0090089biological_processregulation of dipeptide transport
B0097505cellular_componentRad6-Rad18 complex
B0120174biological_processstress-induced homeostatically regulated protein degradation pathway
B1990303cellular_componentUBR1-RAD6 ubiquitin ligase complex
B1990304cellular_componentMUB1-RAD6-UBR2 ubiquitin ligase complex
B1990305cellular_componentRAD6-UBR2 ubiquitin ligase complex
Functional Information from PROSITE/UniProt
site_idPS00183
Number of Residues16
DetailsUBC_1 Ubiquitin-conjugating (UBC) active site signature. FHPNVyan.GeICLdiL
ChainResidueDetails
BPHE77-LEU92

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
DLYS27-ASP52
CLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
DARG54
DARG72

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Essential for function
ChainResidueDetails
DHIS68

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291
ChainResidueDetails
DSER65

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
ChainResidueDetails
DTHR66

site_idSWS_FT_FI5
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
ChainResidueDetails
DLYS6

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
ChainResidueDetails
DLYS63

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
ChainResidueDetails
DLYS11
DLYS48

site_idSWS_FT_FI8
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
ChainResidueDetails
DLYS27

site_idSWS_FT_FI9
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
ChainResidueDetails
DLYS29

site_idSWS_FT_FI10
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
ChainResidueDetails
DLYS33

Catalytic Information from CSA
site_idMCSA1
Number of Residues1
DetailsM-CSA 939
ChainResidueDetails
BCYS88nucleophile

222624

PDB entries from 2024-07-17

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