7M15
crystal structure of cj1430 in the presence of GDP-D-glycero-L-gluco-heptose, a GDP-D-glycero-4-keto-D-lyxo-heptose-3,5-epimerase from campylobacter jejuni
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005829 | cellular_component | cytosol |
| A | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| A | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| B | 0005829 | cellular_component | cytosol |
| B | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| B | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| C | 0005829 | cellular_component | cytosol |
| C | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| C | 0016853 | molecular_function | isomerase activity |
| C | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| C | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| D | 0005829 | cellular_component | cytosol |
| D | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| D | 0016853 | molecular_function | isomerase activity |
| D | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| D | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| E | 0005829 | cellular_component | cytosol |
| E | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| E | 0016853 | molecular_function | isomerase activity |
| E | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| E | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| F | 0005829 | cellular_component | cytosol |
| F | 0008830 | molecular_function | dTDP-4-dehydrorhamnose 3,5-epimerase activity |
| F | 0016853 | molecular_function | isomerase activity |
| F | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| F | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 34 |
| Details | binding site for residue YO7 A 201 |
| Chain | Residue |
| A | LYS54 |
| A | TYR142 |
| A | ASP144 |
| A | ALA145 |
| A | GLN148 |
| A | ARG172 |
| A | HOH307 |
| A | HOH309 |
| A | HOH310 |
| A | HOH316 |
| A | HOH328 |
| A | ARG64 |
| A | HOH336 |
| A | HOH341 |
| A | HOH349 |
| A | HOH359 |
| A | HOH371 |
| A | HOH387 |
| A | HOH389 |
| B | HIS0 |
| B | MET1 |
| B | ASN22 |
| A | GLY65 |
| B | PHE24 |
| B | ARG28 |
| B | ILE31 |
| B | TRP32 |
| B | THR33 |
| A | HIS67 |
| A | LYS74 |
| A | ASN121 |
| A | HIS123 |
| A | TYR132 |
| A | TYR134 |
| site_id | AC2 |
| Number of Residues | 33 |
| Details | binding site for residue YO7 B 201 |
| Chain | Residue |
| A | HIS0 |
| A | MET1 |
| A | ASN22 |
| A | PHE24 |
| A | ARG28 |
| A | ILE31 |
| A | TRP32 |
| A | THR33 |
| A | HOH324 |
| B | LYS54 |
| B | ARG64 |
| B | GLY65 |
| B | HIS67 |
| B | LYS74 |
| B | ASN121 |
| B | HIS123 |
| B | TYR132 |
| B | TYR134 |
| B | TYR142 |
| B | ASP144 |
| B | ALA145 |
| B | GLN148 |
| B | ARG172 |
| B | HOH308 |
| B | HOH313 |
| B | HOH320 |
| B | HOH321 |
| B | HOH322 |
| B | HOH336 |
| B | HOH352 |
| B | HOH368 |
| B | HOH383 |
| B | HOH403 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 202 |
| Chain | Residue |
| A | HIS59 |
| B | GLU30 |
| B | HOH306 |
| B | HOH346 |
| C | LYS11 |
| site_id | AC4 |
| Number of Residues | 32 |
| Details | binding site for residue YO7 C 201 |
| Chain | Residue |
| D | ARG28 |
| D | ILE31 |
| D | TRP32 |
| D | THR33 |
| D | HOH346 |
| C | LYS54 |
| C | ARG64 |
| C | HIS67 |
| C | LYS74 |
| C | ASN121 |
| C | HIS123 |
| C | TYR132 |
| C | TYR134 |
| C | ASP144 |
| C | GLN148 |
| C | ARG172 |
| C | HOH301 |
| C | HOH307 |
| C | HOH320 |
| C | HOH323 |
| C | HOH337 |
| C | HOH340 |
| C | HOH342 |
| C | HOH344 |
| C | HOH362 |
| C | HOH371 |
| C | HOH375 |
| C | HOH403 |
| D | MET1 |
| D | ILE3 |
| D | ASN22 |
| D | PHE24 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue EDO C 202 |
| Chain | Residue |
| B | LYS11 |
| C | GLY29 |
| C | GLU30 |
| C | HOH315 |
| D | ASN57 |
| D | HIS59 |
| site_id | AC6 |
| Number of Residues | 31 |
| Details | binding site for residue YO7 D 201 |
| Chain | Residue |
| C | HIS0 |
| C | MET1 |
| C | ASN22 |
| C | PHE24 |
| C | ARG28 |
| C | ILE31 |
| C | TRP32 |
| C | THR33 |
| C | HOH328 |
| D | LYS54 |
| D | ARG64 |
| D | GLY65 |
| D | HIS67 |
| D | LYS74 |
| D | ASN121 |
| D | HIS123 |
| D | TYR132 |
| D | TYR134 |
| D | ASP144 |
| D | GLN148 |
| D | ARG172 |
| D | HOH308 |
| D | HOH309 |
| D | HOH315 |
| D | HOH326 |
| D | HOH332 |
| D | HOH352 |
| D | HOH357 |
| D | HOH358 |
| D | HOH359 |
| D | HOH372 |
| site_id | AC7 |
| Number of Residues | 29 |
| Details | binding site for residue YO7 E 201 |
| Chain | Residue |
| E | LYS54 |
| E | ARG64 |
| E | HIS67 |
| E | LYS74 |
| E | ASN121 |
| E | HIS123 |
| E | TYR132 |
| E | TYR134 |
| E | TYR142 |
| E | ASP144 |
| E | GLN148 |
| E | ARG172 |
| E | HOH301 |
| E | HOH311 |
| E | HOH317 |
| E | HOH320 |
| E | HOH336 |
| E | HOH339 |
| E | HOH364 |
| E | HOH373 |
| F | HIS0 |
| F | MET1 |
| F | ASN22 |
| F | PHE24 |
| F | ARG28 |
| F | ILE31 |
| F | TRP32 |
| F | THR33 |
| F | HOH358 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue EDO E 202 |
| Chain | Residue |
| A | ASP147 |
| E | CYS90 |
| E | LYS92 |
| E | ASP93 |
| E | EDO203 |
| E | HOH354 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue EDO E 203 |
| Chain | Residue |
| E | CYS90 |
| E | ASN118 |
| E | PHE149 |
| E | TYR151 |
| E | EDO202 |
| site_id | AD1 |
| Number of Residues | 33 |
| Details | binding site for residue YO7 F 201 |
| Chain | Residue |
| E | HIS0 |
| E | MET1 |
| E | ASN22 |
| E | LYS23 |
| E | PHE24 |
| E | ARG28 |
| E | ILE31 |
| E | THR33 |
| E | HOH315 |
| F | LYS54 |
| F | ARG64 |
| F | GLY65 |
| F | HIS67 |
| F | LYS74 |
| F | ASN121 |
| F | HIS123 |
| F | TYR132 |
| F | TYR134 |
| F | TYR142 |
| F | ASP144 |
| F | GLN148 |
| F | ARG172 |
| F | HOH309 |
| F | HOH313 |
| F | HOH319 |
| F | HOH326 |
| F | HOH328 |
| F | HOH334 |
| F | HOH335 |
| F | HOH348 |
| F | HOH357 |
| F | HOH364 |
| F | HOH390 |
| site_id | AD2 |
| Number of Residues | 3 |
| Details | binding site for residue EDO F 202 |
| Chain | Residue |
| D | LYS11 |
| E | GLU30 |
| F | HIS59 |
