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7KVL

SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0008233molecular_functionpeptidase activity
A0019082biological_processviral protein processing
B0008233molecular_functionpeptidase activity
B0019082biological_processviral protein processing
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue PEG A 501
ChainResidue
BGLY79
BHIS80
BSER81
BLYS90

site_idAC2
Number of Residues3
Detailsbinding site for residue PEG A 502
ChainResidue
AGLN19
ALEU67
AASN119

site_idAC3
Number of Residues13
Detailsbinding site for residue X4P A 503
ChainResidue
ALYS269
AGLN273
AHOH674
BARG40
BPHE181
BGLY183
BPRO184
BPHE185
BVAL186
BASP187
BDMS708
AVAL233
ATYR237

site_idAC4
Number of Residues4
Detailsbinding site for residue PEG A 504
ChainResidue
ASER81
ALYS88
ALYS90
AHOH601

site_idAC5
Number of Residues4
Detailsbinding site for residue PEG A 505
ChainResidue
AGLU14
AGLY15
AASN95
ALYS97

site_idAC6
Number of Residues7
Detailsbinding site for residue PEG A 506
ChainResidue
APHE223
ATHR224
BARG105
BPHE134
BDMS708
BHOH857
BHOH861

site_idAC7
Number of Residues3
Detailsbinding site for residue PEG A 507
ChainResidue
AASN180
APHE181
AGLY183

site_idAC8
Number of Residues6
Detailsbinding site for residue PEG A 508
ChainResidue
APRO184
AARG188
AGLN192
AHOH625
BTYR101
BLYS102

site_idAC9
Number of Residues4
Detailsbinding site for residue DMS A 509
ChainResidue
ALYS5
AVAL125
BALA7
BGLN127

site_idAD1
Number of Residues1
Detailsbinding site for residue DMS A 510
ChainResidue
AASN84

site_idAD2
Number of Residues5
Detailsbinding site for residue DMS A 511
ChainResidue
AGLN19
AGLN69
AGLY71
AASN119
AHOH602

site_idAD3
Number of Residues1
Detailsbinding site for residue DMS A 512
ChainResidue
AMET276

site_idAD4
Number of Residues5
Detailsbinding site for residue DMS A 513
ChainResidue
AMET6
AALA7
APHE8
BSER123
BHOH867

site_idAD5
Number of Residues3
Detailsbinding site for residue PEG B 701
ChainResidue
AARG131
ALYS137
BARG4

site_idAD6
Number of Residues3
Detailsbinding site for residue SER B 702
ChainResidue
BVAL297
BARG298
BCYS300

site_idAD7
Number of Residues3
Detailsbinding site for residue PEG B 703
ChainResidue
BGLU14
BGLY15
BLYS97

site_idAD8
Number of Residues5
Detailsbinding site for residue PEG B 704
ChainResidue
BMET17
BGLN19
BGLN69
BGLY71
BGLY120

site_idAD9
Number of Residues3
Detailsbinding site for residue PEG B 705
ChainResidue
BTYR239
BLEU287
BHOH817

site_idAE1
Number of Residues4
Detailsbinding site for residue DMS B 706
ChainResidue
ASER123
BMET6
BGLN127
BARG298

site_idAE2
Number of Residues1
Detailsbinding site for residue DMS B 707
ChainResidue
BARG4

site_idAE3
Number of Residues5
Detailsbinding site for residue DMS B 708
ChainResidue
APHE223
ATHR224
AX4P503
APEG506
BPHE181

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For 3CL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00772, ECO:0000305|PubMed:32198291
ChainResidueDetails
AHIS41
BHIS41

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Nucleophile; for 3CL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00772, ECO:0000269|PubMed:32198291
ChainResidueDetails
ACYS145
BCYS145

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Cleavage; by 3CL-PRO => ECO:0000250|UniProtKB:P0C6V3
ChainResidueDetails
AGLN306
BGLN306

site_idSWS_FT_FI4
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:39223933
ChainResidueDetails
ALYS5
ALYS90
BLYS5
BLYS90

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PDB entries from 2025-06-11

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