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7E9M

Crystal Structure of Spindlin1 bound to SPINDOC Docpep3

Functional Information from GO Data
ChainGOidnamespacecontents
A0000785cellular_componentchromatin
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005819cellular_componentspindle
A0005829cellular_componentcytosol
A0006325biological_processchromatin organization
A0006355biological_processregulation of DNA-templated transcription
A0007276biological_processgamete generation
A0009303biological_processrRNA transcription
A0016055biological_processWnt signaling pathway
A0030177biological_processpositive regulation of Wnt signaling pathway
A0031965cellular_componentnuclear membrane
A0035064molecular_functionobsolete methylated histone binding
A0045893biological_processpositive regulation of DNA-templated transcription
A0051321biological_processmeiotic cell cycle
A0071168biological_processprotein localization to chromatin
A0140002molecular_functionhistone H3K4me3 reader activity
A0140566molecular_functionhistone reader activity
A0141196biological_processtransposable element silencing by piRNA-mediated DNA methylation
C0000785cellular_componentchromatin
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005730cellular_componentnucleolus
C0005819cellular_componentspindle
C0005829cellular_componentcytosol
C0006325biological_processchromatin organization
C0006355biological_processregulation of DNA-templated transcription
C0007276biological_processgamete generation
C0009303biological_processrRNA transcription
C0016055biological_processWnt signaling pathway
C0030177biological_processpositive regulation of Wnt signaling pathway
C0031965cellular_componentnuclear membrane
C0035064molecular_functionobsolete methylated histone binding
C0045893biological_processpositive regulation of DNA-templated transcription
C0051321biological_processmeiotic cell cycle
C0071168biological_processprotein localization to chromatin
C0140002molecular_functionhistone H3K4me3 reader activity
C0140566molecular_functionhistone reader activity
C0141196biological_processtransposable element silencing by piRNA-mediated DNA methylation
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues126
DetailsRegion: {"description":"Tudor-like domain 1","evidences":[{"source":"PubMed","id":"23077255","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24589551","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsRegion: {"description":"Histone H3K4me3 and H3R8me2a binding","evidences":[{"source":"PubMed","id":"23077255","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24589551","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues122
DetailsRegion: {"description":"Tudor-like domain 2","evidences":[{"source":"PubMed","id":"23077255","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24589551","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues98
DetailsRegion: {"description":"Tudor-like domain 3","evidences":[{"source":"PubMed","id":"23077255","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24589551","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Histone H3K4me3 and H3R8me2a binding","evidences":[{"source":"PubMed","id":"23077255","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24589551","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by AURKA","evidences":[{"source":"PubMed","id":"22258766","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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