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7DE1

Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0019013cellular_componentviral nucleocapsid
B0003723molecular_functionRNA binding
B0019013cellular_componentviral nucleocapsid
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue PEG B 401
ChainResidue
BASP358
BALA359
BTHR362

site_idAC2
Number of Residues2
Detailsbinding site for residue PEG B 402
ChainResidue
BGLN303
BPEG403

site_idAC3
Number of Residues6
Detailsbinding site for residue PEG B 403
ChainResidue
BHOH557
BHOH584
AVAL350
BGLN303
BLEU352
BPEG402

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues206
DetailsRegion: {"description":"Dimerization","evidences":[{"source":"HAMAP-Rule","id":"MF_04096","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues160
DetailsRegion: {"description":"Putative NLRP3 binding","evidences":[{"source":"PubMed","id":"34341353","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsMotif: {"description":"Nuclear localization signal","evidences":[{"source":"UniProtKB","id":"P59595","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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