7DCE
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| X | 0002513 | biological_process | tolerance induction to self antigen |
| X | 0005886 | cellular_component | plasma membrane |
| X | 0006915 | biological_process | apoptotic process |
| X | 0016020 | cellular_component | membrane |
| X | 0017128 | molecular_function | phospholipid scramblase activity |
| X | 0043652 | biological_process | engulfment of apoptotic cell |
| X | 0045663 | biological_process | positive regulation of myoblast differentiation |
| X | 0048471 | cellular_component | perinuclear region of cytoplasm |
| X | 0051649 | biological_process | establishment of localization in cell |
| X | 0070782 | biological_process | phosphatidylserine exposure on apoptotic cell surface |
| X | 0097350 | biological_process | neutrophil clearance |
| X | 1902742 | biological_process | apoptotic process involved in development |
Functional Information from PROSITE/UniProt
| site_id | PS00290 |
| Number of Residues | 7 |
| Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACEVTH |
| Chain | Residue | Details |
| L | TYR196-HIS202 | |
| H | TYR193-HIS199 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 177 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 94 |
| Details | Domain: {"description":"Ig-like V-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00114","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"12754519","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19159218","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19349973","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 53 |
| Details | Topological domain: {"description":"Extracellular","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 96 |
| Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q8C0T0","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
