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7CCY

Crystal structure of the 2-iodoporphobilinogen-bound holo form of human hydroxymethylbilane synthase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004418molecular_functionhydroxymethylbilane synthase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006779biological_processporphyrin-containing compound biosynthetic process
A0006782biological_processprotoporphyrinogen IX biosynthetic process
A0006783biological_processheme biosynthetic process
A0006784biological_processheme A biosynthetic process
A0006785biological_processheme B biosynthetic process
A0016740molecular_functiontransferase activity
A0018160biological_processpeptidyl-pyrromethane cofactor linkage
A0033014biological_processtetrapyrrole biosynthetic process
A0048034biological_processheme O biosynthetic process
C0004418molecular_functionhydroxymethylbilane synthase activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006779biological_processporphyrin-containing compound biosynthetic process
C0006782biological_processprotoporphyrinogen IX biosynthetic process
C0006783biological_processheme biosynthetic process
C0006784biological_processheme A biosynthetic process
C0006785biological_processheme B biosynthetic process
C0016740molecular_functiontransferase activity
C0018160biological_processpeptidyl-pyrromethane cofactor linkage
C0033014biological_processtetrapyrrole biosynthetic process
C0048034biological_processheme O biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue DPM A 401
ChainResidue
ASER96
AARG195
AGLY218
ACYS261
AHOH503
AHOH504
AHOH507
AHOH523
ALYS98
AASP99
ASER146
ASER147
AARG149
AARG150
AARG173
AALA189

site_idAC2
Number of Residues12
Detailsbinding site for residue FWL C 401
ChainResidue
CARG26
CSER28
CGLN34
CPHE77
CSER96
CASP99
CARG167
CGLY168
CASN169
CLEU170
CARG173
CDPM402

site_idAC3
Number of Residues18
Detailsbinding site for Di-peptide DPM C 402 and CYS C 261
ChainResidue
CSER96
CLYS98
CASP99
CTHR145
CSER146
CSER147
CARG149
CARG150
CARG173
CLEU188
CALA189
CGLY218
CGLY260
CSER262
CVAL263
CFWL401
CHOH509
CHOH519

Functional Information from PROSITE/UniProt
site_idPS00533
Number of Residues17
DetailsPORPHOBILINOGEN_DEAM Porphobilinogen deaminase cofactor-binding site. ERaFlrhLeGGCsVPVA
ChainResidueDetails
AGLU250-ALA266

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378
ChainResidueDetails
ASER2
CSER2

site_idSWS_FT_FI2
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER15
ASER69
ASER147
CSER15
CSER69
CSER147

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P22907
ChainResidueDetails
ALYS74
CLYS74

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: S-(dipyrrolylmethanemethyl)cysteine => ECO:0000269|PubMed:18936296
ChainResidueDetails
ACYS261
CCYS261

222415

PDB entries from 2024-07-10

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