7C5G
Crystal Structure of C150S mutant of Glyceraldehyde-3-phosphate-dehydrogenase1 from Escherichia coli complexed with PO4 at 1.98 Angstrom resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
O | 0000166 | molecular_function | nucleotide binding |
O | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
O | 0005737 | cellular_component | cytoplasm |
O | 0006006 | biological_process | glucose metabolic process |
O | 0016491 | molecular_function | oxidoreductase activity |
O | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
O | 0042802 | molecular_function | identical protein binding |
O | 0050661 | molecular_function | NADP binding |
O | 0051287 | molecular_function | NAD binding |
P | 0000166 | molecular_function | nucleotide binding |
P | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
P | 0005737 | cellular_component | cytoplasm |
P | 0006006 | biological_process | glucose metabolic process |
P | 0016491 | molecular_function | oxidoreductase activity |
P | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
P | 0042802 | molecular_function | identical protein binding |
P | 0050661 | molecular_function | NADP binding |
P | 0051287 | molecular_function | NAD binding |
Q | 0000166 | molecular_function | nucleotide binding |
Q | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
Q | 0005737 | cellular_component | cytoplasm |
Q | 0006006 | biological_process | glucose metabolic process |
Q | 0016491 | molecular_function | oxidoreductase activity |
Q | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Q | 0042802 | molecular_function | identical protein binding |
Q | 0050661 | molecular_function | NADP binding |
Q | 0051287 | molecular_function | NAD binding |
R | 0000166 | molecular_function | nucleotide binding |
R | 0004365 | molecular_function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity |
R | 0005737 | cellular_component | cytoplasm |
R | 0006006 | biological_process | glucose metabolic process |
R | 0016491 | molecular_function | oxidoreductase activity |
R | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
R | 0042802 | molecular_function | identical protein binding |
R | 0050661 | molecular_function | NADP binding |
R | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 35 |
Details | binding site for residue NAD O 401 |
Chain | Residue |
O | ASN7 |
O | LYS78 |
O | CYS96 |
O | THR97 |
O | GLY98 |
O | PHE99 |
O | SER120 |
O | ALA121 |
O | SER150 |
O | ASN315 |
O | PHE319 |
O | GLY8 |
O | PO4402 |
O | HOH522 |
O | HOH543 |
O | HOH549 |
O | HOH561 |
O | HOH562 |
O | HOH566 |
O | HOH601 |
O | HOH618 |
O | HOH634 |
O | PHE9 |
O | HOH647 |
O | HOH654 |
O | HOH688 |
O | HOH696 |
O | HOH697 |
O | HOH702 |
O | GLY10 |
O | ARG11 |
O | ILE12 |
O | ASN33 |
O | ASP34 |
O | LEU35 |
site_id | AC2 |
Number of Residues | 8 |
Details | binding site for residue PO4 O 402 |
Chain | Residue |
O | THR180 |
O | THR182 |
O | ARG232 |
O | NAD401 |
O | HOH549 |
O | HOH566 |
O | HOH702 |
O | HOH726 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue CL O 403 |
Chain | Residue |
O | LYS227 |
O | GLY228 |
O | HOH728 |
O | HOH778 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue CL O 404 |
Chain | Residue |
O | HIS177 |
O | HIS207 |
O | ALA230 |
O | ARG232 |
O | HOH646 |
site_id | AC5 |
Number of Residues | 32 |
Details | binding site for residue NAD P 401 |
Chain | Residue |
P | ASN7 |
P | GLY8 |
P | GLY10 |
P | ARG11 |
P | ILE12 |
P | ASN33 |
P | ASP34 |
P | LEU35 |
P | LYS78 |
P | CYS96 |
P | THR97 |
P | GLY98 |
P | PHE99 |
P | SER120 |
P | ALA121 |
P | SER150 |
P | ASN315 |
P | PHE319 |
P | PO4402 |
P | HOH502 |
P | HOH505 |
P | HOH507 |
P | HOH515 |
P | HOH554 |
P | HOH588 |
P | HOH604 |
P | HOH614 |
P | HOH636 |
P | HOH656 |
P | HOH657 |
P | HOH663 |
P | HOH686 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue PO4 P 402 |
Chain | Residue |
P | THR180 |
P | THR182 |
P | ARG232 |
P | NAD401 |
P | HOH507 |
P | HOH686 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue CL P 403 |
Chain | Residue |
P | LYS227 |
P | GLY228 |
P | HOH717 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue CL P 404 |
Chain | Residue |
P | HIS177 |
P | HIS207 |
P | ALA230 |
P | ARG232 |
P | HOH615 |
site_id | AC9 |
Number of Residues | 34 |
Details | binding site for residue NAD Q 401 |
Chain | Residue |
Q | GLY8 |
Q | PHE9 |
Q | GLY10 |
Q | ARG11 |
Q | ILE12 |
Q | ASN33 |
Q | ASP34 |
Q | LYS78 |
Q | CYS96 |
Q | THR97 |
Q | GLY98 |
Q | PHE99 |
Q | SER120 |
Q | ALA121 |
Q | ASN315 |
Q | PHE319 |
Q | PO4402 |
Q | HOH501 |
Q | HOH514 |
Q | HOH517 |
Q | HOH518 |
Q | HOH531 |
Q | HOH536 |
Q | HOH570 |
Q | HOH573 |
Q | HOH595 |
Q | HOH597 |
Q | HOH612 |
Q | HOH618 |
Q | HOH633 |
Q | HOH667 |
Q | HOH681 |
Q | HOH688 |
Q | ASN7 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue PO4 Q 402 |
Chain | Residue |
Q | THR180 |
Q | THR182 |
Q | ARG232 |
Q | NAD401 |
Q | HOH517 |
Q | HOH595 |
Q | HOH667 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue EDO Q 403 |
Chain | Residue |
Q | SER25 |
Q | ASN26 |
Q | ILE27 |
Q | ASP28 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue CL Q 404 |
Chain | Residue |
Q | LYS227 |
Q | GLY228 |
Q | HOH708 |
site_id | AD4 |
Number of Residues | 33 |
Details | binding site for residue NAD R 401 |
Chain | Residue |
R | ASN7 |
R | GLY8 |
R | PHE9 |
R | GLY10 |
R | ARG11 |
R | ILE12 |
R | ASN33 |
R | ASP34 |
R | LYS78 |
R | CYS96 |
R | THR97 |
R | GLY98 |
R | PHE99 |
R | SER120 |
R | ALA121 |
R | ASN315 |
R | PHE319 |
R | PO4402 |
R | HOH505 |
R | HOH508 |
R | HOH511 |
R | HOH524 |
R | HOH526 |
R | HOH528 |
R | HOH530 |
R | HOH551 |
R | HOH556 |
R | HOH568 |
R | HOH576 |
R | HOH620 |
R | HOH631 |
R | HOH634 |
R | HOH644 |
site_id | AD5 |
Number of Residues | 9 |
Details | binding site for residue PO4 R 402 |
Chain | Residue |
R | THR180 |
R | THR182 |
R | ARG232 |
R | NAD401 |
R | PO4403 |
R | HOH502 |
R | HOH505 |
R | HOH528 |
R | HOH634 |
site_id | AD6 |
Number of Residues | 9 |
Details | binding site for residue PO4 R 403 |
Chain | Residue |
R | SER149 |
R | SER150 |
R | THR151 |
R | HIS177 |
R | THR209 |
R | ARG232 |
R | PO4402 |
R | HOH501 |
R | HOH528 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue CL R 404 |
Chain | Residue |
Q | HOH579 |
R | LYS227 |
R | GLY228 |
Functional Information from PROSITE/UniProt
site_id | PS00430 |
Number of Residues | 89 |
Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. hhhhhhssglvprgshmasmskvgingfgrigrlvlrrllevksnidvvaindltspkilayllkhdsnygpfpwsvdfte..................................DSLIVDGK |
Chain | Residue | Details |
O | HIS-18-LYS70 |