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7BIK

Crystal structure of YTHDF2 in complex with m6Am

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue GOL A 601
ChainResidue
ATHR435
AGLU436
ATRP491
AHOH742

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 602
ChainResidue
AHOH713
AHOH724
ALYS416
ATYR418
AASN462
ATRP491
AHOH701

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 603
ChainResidue
AVAL461
AGLY463
ASER464
AGLY465
AASN507
AHOH749

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 604
ChainResidue
AARG425
ALYS428
ATYR429
ALYS536
AHOH741

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 605
ChainResidue
AASN507
AARG511
ATHR524
AASN525

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 606
ChainResidue
AARG514
AASN520
BLYS428

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL B 601
ChainResidue
BHIS409
BTYR446
BLYS474
BSER475
BALA476

site_idAC8
Number of Residues13
Detailsbinding site for residue TV8 B 602
ChainResidue
BLYS416
BSER417
BTYR418
BASP422
BTRP432
BCYS433
BTRP486
BLYS490
BTRP491
BARG527
BASP528
BHOH707
BHOH757

site_idAC9
Number of Residues12
Detailsbinding site for residue SO4 B 603
ChainResidue
BLYS416
BVAL461
BASN462
BGLY463
BSER464
BGLY465
BASN507
BTHR524
BHOH704
BHOH722
BHOH730
BHOH761

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BLYS428
BTYR429
BLYS536
BHOH744

site_idAD2
Number of Residues3
Detailsbinding site for residue SO4 B 605
ChainResidue
BASN507
BARG511
BHOH705

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues268
DetailsDomain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25412658","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4RDN","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

248335

PDB entries from 2026-01-28

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