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7AKJ

Structure of the SARS-CoV spike glycoprotein in complex with the 47D11 neutralizing antibody Fab fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0016020cellular_componentmembrane
A0019031cellular_componentviral envelope
A0019062biological_processvirion attachment to host cell
A0019064biological_processfusion of virus membrane with host plasma membrane
A0020002cellular_componenthost cell plasma membrane
A0039587biological_processsuppression by virus of host tetherin activity
A0039654biological_processfusion of virus membrane with host endosome membrane
A0042802molecular_functionidentical protein binding
A0044173cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment membrane
A0046598biological_processpositive regulation of viral entry into host cell
A0046718biological_processsymbiont entry into host cell
A0046789molecular_functionhost cell surface receptor binding
A0046813biological_processreceptor-mediated virion attachment to host cell
A0052170biological_processsymbiont-mediated suppression of host innate immune response
A0055036cellular_componentvirion membrane
A0061025biological_processmembrane fusion
A0075509biological_processendocytosis involved in viral entry into host cell
B0005515molecular_functionprotein binding
B0016020cellular_componentmembrane
B0019031cellular_componentviral envelope
B0019062biological_processvirion attachment to host cell
B0019064biological_processfusion of virus membrane with host plasma membrane
B0020002cellular_componenthost cell plasma membrane
B0039587biological_processsuppression by virus of host tetherin activity
B0039654biological_processfusion of virus membrane with host endosome membrane
B0042802molecular_functionidentical protein binding
B0044173cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment membrane
B0046598biological_processpositive regulation of viral entry into host cell
B0046718biological_processsymbiont entry into host cell
B0046789molecular_functionhost cell surface receptor binding
B0046813biological_processreceptor-mediated virion attachment to host cell
B0052170biological_processsymbiont-mediated suppression of host innate immune response
B0055036cellular_componentvirion membrane
B0061025biological_processmembrane fusion
B0075509biological_processendocytosis involved in viral entry into host cell
C0005515molecular_functionprotein binding
C0016020cellular_componentmembrane
C0019031cellular_componentviral envelope
C0019062biological_processvirion attachment to host cell
C0019064biological_processfusion of virus membrane with host plasma membrane
C0020002cellular_componenthost cell plasma membrane
C0039587biological_processsuppression by virus of host tetherin activity
C0039654biological_processfusion of virus membrane with host endosome membrane
C0042802molecular_functionidentical protein binding
C0044173cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment membrane
C0046598biological_processpositive regulation of viral entry into host cell
C0046718biological_processsymbiont entry into host cell
C0046789molecular_functionhost cell surface receptor binding
C0046813biological_processreceptor-mediated virion attachment to host cell
C0052170biological_processsymbiont-mediated suppression of host innate immune response
C0055036cellular_componentvirion membrane
C0061025biological_processmembrane fusion
C0075509biological_processendocytosis involved in viral entry into host cell
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsSITE: Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428
ChainResidueDetails
CARG667
CARG797
BARG667
BARG797
AARG667
AARG797

site_idSWS_FT_FI2
Number of Residues66
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
ChainResidueDetails
CASN29
CASN318
CASN330
CASN357
CASN589
CASN602
CASN691
CASN699
CASN783
CASN1056
CASN1080
CASN65
CASN1116
CASN1140
CASN1155
BASN29
BASN65
BASN73
BASN109
BASN118
BASN119
BASN158
CASN73
BASN227
BASN269
BASN318
BASN330
BASN357
BASN589
BASN602
BASN691
BASN699
BASN783
CASN109
BASN1056
BASN1080
BASN1116
BASN1140
BASN1155
AASN29
AASN65
AASN73
AASN109
AASN118
CASN118
AASN119
AASN158
AASN227
AASN269
AASN318
AASN330
AASN357
AASN589
AASN602
AASN691
CASN119
AASN699
AASN783
AASN1056
AASN1080
AASN1116
AASN1140
AASN1155
CASN158
CASN227
CASN269

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PDB entries from 2024-10-30

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