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6ZX3

OMPD-domain of human UMPS in complex with 6-thiocarboxamido-UMP at 1.15 Angstroms resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue QRZ A 501
ChainResidue
ASER257
AMET371
ASER372
APRO417
AGLN430
ATYR432
AGLY450
AARG451
AHOH630
AHOH633
AHOH661
AASP259
ALYS281
AHIS283
AASP312
ALYS314
AASP317
AILE318
ATHR321

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 502
ChainResidue
ATHR374
AGLY429
AHOH609
AHOH698

site_idAC3
Number of Residues8
Detailsbinding site for residue PRO A 503
ChainResidue
AGLY228
AGLU232
ALEU421
AHOH606
AHOH749
AHOH858
AHOH879
AHOH926

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 504
ChainResidue
ASER348
ALYS352
AHIS393
AHOH669
AHOH690

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IFeDrKfaDIGnTV
ChainResidueDetails
AILE309-VAL322

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsActive site: {"description":"For OMPdecase activity","evidences":[{"source":"PubMed","id":"18184586","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18184586","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2QCD","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18184586","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2QCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2QCH","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18184586","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2QCL","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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